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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g00330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 193aa MW: 22905.1 Da PI: 8.2061 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 40 | 93 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq+ Le+ F +++++ e++ ++A +lg++ rqV vWFqNrR ++k Vradi07g00330.1 40 KKRKLTAEQVSLLEKNFCSEQKLESERKDQIAFELGMDPRQVAVWFQNRRFRWK 93 45699************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109.1 | 3.2e-35 | 40 | 130 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eqv+lLE++F +e+kLe+erK ++a eLg++prqvavWFqnrR R+ktk+lE++y+ Lk+ +++ + ++++Le+ v +L+e+l Vradi07g00330.1 40 KKRKLTAEQVSLLEKNFCSEQKLESERKDQIAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLL 130 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.196 | 35 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-16 | 38 | 99 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-15 | 40 | 93 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-18 | 40 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.69E-12 | 40 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-19 | 42 | 102 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 70 | 93 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MLFSHQYPGA LFTEVTPPQQ GKEAKPRRKR NKNGAAATPK KRKLTAEQVS LLEKNFCSEQ 60 KLESERKDQI AFELGMDPRQ VAVWFQNRRF RWKTKKLEEE YSNLKNVHET TMLQKCHLET 120 RVLKLEEQLL EAKKEIQQLQ ERDERASSKH LLEAVNPPFP EEFRVEEYDY GDVFYIPETH 180 YINGMEWINL YM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 42 | RKRNKNGAAATPKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g00330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-152 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022640137.1 | 1e-142 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 7e-55 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A3Q0FCN6 | 1e-140 | A0A3Q0FCN6_VIGRR; homeobox-leucine zipper protein ATHB-40-like | ||||
STRING | XP_007156020.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-47 | homeobox protein 40 |
Publications ? help Back to Top | |||
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