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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g15700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | BES1 | ||||||||
Protein Properties | Length: 314aa MW: 34140.3 Da PI: 8.842 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 207 | 5.3e-64 | 12 | 155 | 1 | 145 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas.aspess 93 ++s+rkp+w+ErEnn+rRERrRRaiaakiy+GLRaqGny+lpk++DnneVlkALc+eAGw ve+DGttyrkg+kp+ a+ ag+s + + +ss Vradi06g15700.1 12 AASRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWCVEEDGTTYRKGCKPP-LANGAGNSMRnVPFCSS 104 589*************************************************************************.66666666651556777 PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 ++ s+ ss+ +sp++sy+ sp+sssfpsp +ld + + ++l+p++++ sl Vradi06g15700.1 105 QSPSPFSSSYPSPIPSYQVSPSSSSFPSPFRLDVDKD-NVSNLIPYIRNASL 155 77******************************98865.46899999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 8.2E-62 | 14 | 153 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MASDGATSAA AAASRRKPSW RERENNRRRE RRRRAIAAKI YSGLRAQGNY NLPKHCDNNE 60 VLKALCAEAG WCVEEDGTTY RKGCKPPLAN GAGNSMRNVP FCSSQSPSPF SSSYPSPIPS 120 YQVSPSSSSF PSPFRLDVDK DNVSNLIPYI RNASLSLPPL RISNSAPVTP PLSSPTSRNP 180 KPIPTWESIA KESMTSFNYP LFAASAPASP THRHLYTPAT IPECDESDTS TCESNQWMKF 240 QSFGPSASTL PASPTFNLVK PLVPHGVPDN SIQEMRTSSE EFGVQVKPWV GEKIHEVALD 300 DLELTLGSGK VRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-31 | 15 | 97 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-31 | 15 | 97 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-31 | 15 | 97 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-31 | 15 | 97 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 33 | RRKPSWRERENNRRRERRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid (BR) signaling. Transcription factor that activates target gene expression by binding specifically to the DNA sequence 5'-CANNTG-3'(E box) through its N-terminal domain. Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BIM1, BIM2 or BIM3. The C-terminal domain is probably involved in transcriptional activation (PubMed:12007405, PubMed:15680330, PubMed:18467490, PubMed:19170933). Recruits the transcription elongation factor IWS1 to control BR-regulated gene expression (PubMed:20139304). Forms a trimeric complex with IWS1 and ASHH2/SDG8 to regulate BR-regulated gene expression (PubMed:24838002). Promotes quiescent center (QC) self-renewal by cell divisions in the primary root. Binds to the E-boxes of the BRAVO promoter to repress its expression (PubMed:24981610). {ECO:0000269|PubMed:12007405, ECO:0000269|PubMed:15680330, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:24838002, ECO:0000269|PubMed:24981610}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g15700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502550.1 | 0.0 | protein BRASSINAZOLE-RESISTANT 1-like | ||||
Swissprot | Q9LN63 | 1e-117 | BZR2_ARATH; Protein BRASSINAZOLE-RESISTANT 2 | ||||
TrEMBL | A0A1S3U950 | 0.0 | A0A1S3U950_VIGRR; protein BRASSINAZOLE-RESISTANT 1-like | ||||
STRING | XP_007160782.1 | 1e-178 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1275 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 1e-105 | BES1 family protein |