PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 433aa    MW: 47846.1 Da    PI: 7.0311
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19321101498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + l lpk+f ++ ++k++    +tl+ +sg  W+v +    ++++ +l++GW++Fvk++ Lke+Df+vFk++g  ef++ v vf+
  Vradi06g15510.1  32 QHLALPKTFSDNLKKKPPA--NVTLKGPSGVAWNVGM--ITSGDTLYLAGGWEQFVKDHCLKENDFLVFKYNG--EFQFDVLVFD 110
                      4599*****9766766555..7***************..999999*************************977..6666888887 PP
2B3452e-14307395394
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       v+ ps+v k+  +++p+k + eh   ++ s++++l+  +  +W  +++y + + +  lt+GWk+Fv +n+L+e D++vFk  g+++ +lv+
  Vradi06g15510.1 307 VVMRPSHVYKRFFVSMPNKWIGEHI--PPMSQDVILRM-DTGEWAARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNDNLVL 395
                      5789*****************9995..34566888777.6679*******88888888***********************88887666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2117110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.42519112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-2122110IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-1722112IPR003340B3 DNA binding domain
PfamPF023627.3E-1632110IPR003340B3 DNA binding domain
CDDcd100173.91E-2034110No hitNo description
Gene3DG3DSA:2.40.330.101.1E-18303401IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-18304401No hitNo description
SMARTSM010197.1E-12305403IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56305403IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-16305389IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-12306395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGNGCRSWEE DIYWSHFQFL HFAQFLRTGY DQHLALPKTF SDNLKKKPPA NVTLKGPSGV  60
AWNVGMITSG DTLYLAGGWE QFVKDHCLKE NDFLVFKYNG EFQFDVLVFD GGSLCEKASS  120
YFVRKCGHAE AEHVGGSQNK KRDTAEDPMN EGHIPLKAGV ECAQPGKSVH ANGTKEPINV  180
PFETPTPSEE AFNADVESAG AEQITSDGVP LSAVPTETAN GKRIRKLASV VKHVQTKRRG  240
RGRPAKVSTV IERALDWVSG LDAEPVSAVR SAAQEAFISN RRPVTDDEIK NALALAQAGR  300
TDDSLVVVMR PSHVYKRFFV SMPNKWIGEH IPPMSQDVIL RMDTGEWAAR YSYHNIRHTG  360
GLTGGWKHFV LDNNLEEYDV CVFKPAGQMN DNLVLDMSIF RVVEEIVPLS VMSPTGKRGR  420
KPAQNNATLT ET*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g15510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502512.10.0B3 domain-containing protein REM16
TrEMBLA0A1S3U9080.0A0A1S3U908_VIGRR; B3 domain-containing protein REM16
STRINGXP_007160808.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-48B3 family protein