PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 231aa    MW: 25992.2 Da    PI: 7.1771
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.82.1e-252584261
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
     HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61
                     Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y 
  Vradi06g15090.1 25 FLTKTYQLVDDPSTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYM 84
                     9**********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-271786IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-2821188IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-232284IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-152548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-212586IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-156375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-157688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MALLLDNCES ILLSLDTHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYMSELAHM KKLYNDIIYF VQNHVKPVAP SNTYPSLLLC  120
NNSTTNNNSH INNVSTVQRP VKQFVACYSN NSKQARTVNS PTNSSITIVE DEPISNSSKT  180
KLFGVSLQSK KRVHPEYGSN NLQTSETNKA RLLVENDDFF GLNLMPPSTC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-1521921788Heat shock factor protein 1
5d5u_B3e-1521922697Heat shock factor protein 1
5d5v_B3e-1521922697Heat shock factor protein 1
5d5v_D3e-1521922697Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g15090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503529.13e-92heat stress transcription factor B-4-like
TrEMBLA0A1S3UC418e-91A0A1S3UC41_VIGRR; heat stress transcription factor B-4-like
STRINGXP_007160861.12e-72(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-41heat shock transcription factor B4