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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g14410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 627aa MW: 68219.5 Da PI: 7.1031 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.9 | 5.2e-08 | 334 | 383 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV++++++gr++A+++d + + + +Aa+a++ a++k +++ Vradi06g14410.1 334 SQYRGVTRHRWTGRYEAHLWDN-----SCKKEGQTRKG-RQAARAYDLAALKHHQH 383 78*******************2.....12223344444.9***********99875 PP | |||||||
2 | AP2 | 32 | 3.1e-10 | 380 | 423 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Vradi06g14410.1 380 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 423 6789******988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-5 | 334 | 379 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-6 | 334 | 382 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.51E-22 | 334 | 433 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-4 | 335 | 380 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 335 | 431 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-29 | 335 | 437 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 336 | 347 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-5 | 380 | 423 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-14 | 381 | 433 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-15 | 381 | 431 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 413 | 433 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MKSMNDGNTD DGNNHNWLGF SLSPHMKMEI TSSADPPHHH HHHFYHHPQV SAAAAPCNTV 60 PTGFYISPSH LNPSGICYGV GENGAFHPPL AMMPLKSDGS LCIMEALTRS QTQEGFVGLV 120 EVMVPTTSPK LEDFLGGASI GAQDYGRHER EAMALSLDSA YYSSQNAEPE ANRGHPSSLG 180 LLSDPFRQQT HPYYSGLGIY QVEEEAKQPH VTVCSSQMPQ VVEEGVTCFK NWVPTRGYSS 240 TQQNPEQQQV NNSSGMGEGH GASGNAGVGC GELQSLSLSM SPGSQSSCVT VPTQISSSRT 300 ESVAGDAKKR GSAKLGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE 360 GQTRKGRQAA RAYDLAALKH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK 420 FRGVNAVTNF DISRYDVERI MASNTLLAGE LARRNKDSEP RTEAIEYNGV SSQHEAETVN 480 NNENNEKGSS DWKMSLYHQQ QQQQSNNNCD MKTMKCGNYR GSAFSVSLQD LIGIDSVGSS 540 QAMIEESTKI GTHFSNPSSL VTSLSSSREG SPDKTGPTML FPKPPVGSKV VTSPIANGVS 600 VSSWFPTQMR PVSMSHLPVF AAWSDT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g14410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505232.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 6e-98 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1S3UGS3 | 0.0 | A0A1S3UGS3_VIGRR; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_007160953.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-78 | AP2 family protein |