PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 267aa    MW: 29945.3 Da    PI: 8.8234
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18202235134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+t++TplWR+gp g+k+LCnaCG+++rk +
  Vradi06g14040.1 202 CSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKAR 235
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.072196232IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-12196235No hitNo description
SMARTSM004016.6E-19196247IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-15200235IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.27E-13201238No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003202.2E-16202235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MITLFLIHCF IPHFSLLLLL PSLSLCTLHC PLLLHTSHQT FLSLFLSISM TPYSLHSPSP  60
SLQPQTQIFI SSNNQDCPTF FNIFDPRKTI EIGAFTQTYQ QDEKMVLHDG SSSNNLNSPE  120
PVTVDPISRR NEGNLGSYKM DDEDIKHSHG SGKWMSSKMR LMKKMMRRSM SPTSDRLNPQ  180
GQEIRYSQRS PRNTSSSTTR VCSDCNTSTT PLWRSGPKGP KSLCNACGIR QRKARRAMAE  240
ASNVFPRDEV AEAAMLLMEL SCGFVH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-178AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503855.10.0putative GATA transcription factor 22
TrEMBLA0A1S3UCU71e-180A0A1S3UCU7_VIGRR; putative GATA transcription factor 22
STRINGXP_007161012.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.17e-17GATA family protein