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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g09920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 311aa MW: 34788.6 Da PI: 7.7191 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.4 | 8.4e-18 | 199 | 233 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Vradi06g09920.1 199 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 233 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.9E-17 | 193 | 243 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.149 | 193 | 229 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-16 | 194 | 257 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 195 | 230 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.24E-14 | 198 | 245 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 199 | 224 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 199 | 233 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MESPNSSPIF PQFTLDTTTT KNNNPDHFIV EDLLDFSNDD AVNADTIFDS LPVNSTDSSN 60 YDDIAELEWL SNFVEESFSS EDLQKMQLIS GMNARNDHVP KARGFHSEPT RNGFHSEPTR 120 NNPIFNSEVS VPAKARSKRS RGPPCNWASR LLVLSPTTSS SDTEVVAPVS THSGTKKPAK 180 TTPRKKDSGD GSGGDGRRCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA 240 ASPTFVLTKH SNSHRKVLEL RRQKEMVRAQ QHQQQQFLQH HHHQNMLLDV SNSEDYLVHQ 300 HMGPDYRQLI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g09920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503230.1 | 0.0 | GATA transcription factor 12-like | ||||
Swissprot | O82632 | 2e-87 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A1S3UB34 | 0.0 | A0A1S3UB34_VIGRR; GATA transcription factor | ||||
STRING | XP_007140987.1 | 1e-177 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 3e-81 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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