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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g09900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 861aa MW: 95123 Da PI: 8.7064 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.6e-07 | 213 | 234 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H+ Vradi06g09900.1 213 EACTNFAK-GRCRMGASCKFVHD 234 78******.*************6 PP | |||||||
2 | zf-CCCH | 19.3 | 1.9e-06 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa G C+ G C+F+H+ Vradi06g09900.1 277 LCKFFAN-GNCRNGKYCRFSHD 297 9**8888.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.305 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.082 | 150 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 154 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 213 | 237 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-4 | 213 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 274 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-5 | 277 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MSGSGKKRSS KWDLRVDPEF SPDASKQLRP GWSSTDVAGS NSSKWSYLEG SDQLKPDMGF 60 SSKEPFSGGR GSHKDDVMNK DYGCLDATME WDEDGYNKKI SPESEEWKPK RHSQSPKNGW 120 SRPVRSRSRS PPHGFRWDSG VSDRNRMRAG GSAQPCRDFG AGKCRRGSHC HFLHDSQNHE 180 DSWENKSRKD GAPRYSVPQD GRDYSLKSGR SNEACTNFAK GRCRMGASCK FVHDNSDGHG 240 KVSVDELNRE RDIDRRHRDS SFEQGGGHGP NRSNDTLCKF FANGNCRNGK YCRFSHDRQA 300 CRSPNRRLRD DRWASNPGGD HHRMDRPKLS DSDSPNRRPR DDRWGSDGNK ADADEVLDSP 360 KWNDTVAVSD SGKLVEGKSE NVGATEPGFT SLPTRYGWSH SLDKSRVHDE QPFSSDKKEV 420 NSWVSGSTGT NIVSQSIGTD IWLGDTKMSP DWHYRVGSSN TIEEKHEQNK RGVKQGGTYL 480 ATSERDRIQI AAAQGTNQNA ESLNPLHSSG LQAVGQRQAP VPILPSKRGI VDGMPNQEVS 540 TEKKYTAEPN IMDSGLSQVS SRNPPPTENL VGQEQLAQLT NLSASLAHIL GTGQQLPQLY 600 AALNSHYAKD TSSLAKAEVS VVPVSNSFIR SDPAVPVSNT FIHPDPAVGL LKQYDPMCDS 660 VEPKRAAASG LPPSIPPSKR VAEDVMEIPS QLSNTSKQNH GDSSKAAGPE ELVKSDPLVQ 720 LQSGQNTEVG KDDNKEVLPE ERHKSRDDPK STKENGPLEN MEQTGGPDES KKTKDLKGIR 780 AFKFALVEFV KELLKPTWKE GQITKDDYKT IVKKVVDKVT GSMQGANIPQ TQEKIDNYLS 840 FSKPKLNKLV QAYVEKVQKA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g09900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014504621.1 | 0.0 | zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | A0A1S3UF29 | 0.0 | A0A1S3UF29_VIGRR; zinc finger CCCH domain-containing protein 38 | ||||
STRING | XP_007137708.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4099 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-10 | C3H family protein |