PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g09900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 861aa    MW: 95123 Da    PI: 8.7064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g09900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-07213234426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C +fa+ G C+ G++CkF H+
  Vradi06g09900.1 213 EACTNFAK-GRCRMGASCKFVHD 234
                      78******.*************6 PP

2zf-CCCH19.31.9e-06277297526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      lC+ffa  G C+ G  C+F+H+
  Vradi06g09900.1 277 LCKFFAN-GNCRNGKYCRFSHD 297
                      9**8888.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.305150177IPR000571Zinc finger, CCCH-type
SMARTSM003560.082150176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4154176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07209236IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013210235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5213237IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4213234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413272299IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5272298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6274297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5277302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MSGSGKKRSS KWDLRVDPEF SPDASKQLRP GWSSTDVAGS NSSKWSYLEG SDQLKPDMGF  60
SSKEPFSGGR GSHKDDVMNK DYGCLDATME WDEDGYNKKI SPESEEWKPK RHSQSPKNGW  120
SRPVRSRSRS PPHGFRWDSG VSDRNRMRAG GSAQPCRDFG AGKCRRGSHC HFLHDSQNHE  180
DSWENKSRKD GAPRYSVPQD GRDYSLKSGR SNEACTNFAK GRCRMGASCK FVHDNSDGHG  240
KVSVDELNRE RDIDRRHRDS SFEQGGGHGP NRSNDTLCKF FANGNCRNGK YCRFSHDRQA  300
CRSPNRRLRD DRWASNPGGD HHRMDRPKLS DSDSPNRRPR DDRWGSDGNK ADADEVLDSP  360
KWNDTVAVSD SGKLVEGKSE NVGATEPGFT SLPTRYGWSH SLDKSRVHDE QPFSSDKKEV  420
NSWVSGSTGT NIVSQSIGTD IWLGDTKMSP DWHYRVGSSN TIEEKHEQNK RGVKQGGTYL  480
ATSERDRIQI AAAQGTNQNA ESLNPLHSSG LQAVGQRQAP VPILPSKRGI VDGMPNQEVS  540
TEKKYTAEPN IMDSGLSQVS SRNPPPTENL VGQEQLAQLT NLSASLAHIL GTGQQLPQLY  600
AALNSHYAKD TSSLAKAEVS VVPVSNSFIR SDPAVPVSNT FIHPDPAVGL LKQYDPMCDS  660
VEPKRAAASG LPPSIPPSKR VAEDVMEIPS QLSNTSKQNH GDSSKAAGPE ELVKSDPLVQ  720
LQSGQNTEVG KDDNKEVLPE ERHKSRDDPK STKENGPLEN MEQTGGPDES KKTKDLKGIR  780
AFKFALVEFV KELLKPTWKE GQITKDDYKT IVKKVVDKVT GSMQGANIPQ TQEKIDNYLS  840
FSKPKLNKLV QAYVEKVQKA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g09900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504621.10.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A1S3UF290.0A0A1S3UF29_VIGRR; zinc finger CCCH domain-containing protein 38
STRINGXP_007137708.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-10C3H family protein