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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g08690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 674aa MW: 73145.1 Da PI: 6.2082 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 259 | 279 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Vradi06g08690.1 259 PCPEFRK-GSCSKGDACEYAHG 279 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 3.3E-17 | 42 | 168 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.7E-8 | 55 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.0E-16 | 56 | 167 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 20.925 | 59 | 168 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.41 | 59 | 89 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.07E-13 | 61 | 137 | No hit | No description |
SMART | SM00248 | 2.1E-4 | 94 | 126 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.529 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 8.6E-5 | 254 | 280 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-5 | 259 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.094 | 259 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.991 | 289 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 289 | 312 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MEDECVKEEM HHRISALLEF SAADDLIGFK DAVEKEGQDV DGVGLWYGRR AGSKKIGYEE 60 RTPLMVAATF GSLDVSAYIL GTGGVDVNRA SRSDGATALH CAVAGGSAAS VEVVKLLLDA 120 SAEVNAVDAD GNRPIDLIVS VANSIFSPRA RVLAALLEGT CDAAAADQTY FSLPQVIDQI 180 EEQRQEMTTS RVSKDYPIDL SLPDIKNGIY GTDEFRMYTF KVKPCSRAYS HDWTECPFVH 240 PGENARRRDP RKYHYSCVPC PEFRKGSCSK GDACEYAHGI FECWLHPAQY RTRLCKDESG 300 CTRRVCFFAH KPEELRPLYA STGSAIPSPR SYSAGASALE MGSISPIALG SPSVLIPTSS 360 TPPLTPSGAS SPITGSIWSQ SNVAVPTLLL PKSRLKTAST ARDIDLDFEL LGLEAHRRRQ 420 QLMMDDMSGL SSPNWKNSMP NSPSFPVSMS DHIGELNRLS GVKPSNLDDT FGSLEQSILS 480 KFHGISLDVA GPQLQSPTGI QMRSNMNQQL GGYSSGLSTS NMVGSRSFRV DPSAEGASVV 540 LNPRAAAFAK RSHSFIERSM VNHHSELPSP KVSTFSHWGS PDGKLDWTMN GDELNKLRKS 600 SSFGFRSSNS PLTKDSTTMP ANVDDEPDVS WVNSLVKDAP PEAGVEDQRK QCHNGTEAIP 660 ACQRLHVLTL HEF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g08690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505073.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1S3UGB2 | 0.0 | A0A1S3UGB2_VIGRR; zinc finger CCCH domain-containing protein 66 | ||||
STRING | XP_007142205.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |