PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g04450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 617aa    MW: 67370.8 Da    PI: 7.2824
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g04450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06278298526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ GtC+  d+C +aHg
  Vradi06g04450.1 278 PCPEFRK-GTCQKADSCEYAHG 298
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.81E-1635172IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-1738188IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.683184IPR020683Ankyrin repeat-containing domain
PfamPF127966.0E-983149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009683113IPR002110Ankyrin repeat
CDDcd002042.04E-1385184No hitNo description
PROSITE profilePS5008811.701118153IPR002110Ankyrin repeat
SMARTSM002480.011118150IPR002110Ankyrin repeat
PROSITE profilePS5010312.371273300IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001278299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.103308332IPR000571Zinc finger, CCCH-type
SMARTSM0035630308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLRGIWDMCS DSKSKLSSPS LVMENNLQKQ NLDCFRNFSA LLELSASDDF EAFKREVDEK  60
GLDVNEAGFW YGRRIGSKKM GSETRTPLMI ASLFGSIKVL KYILEAGTVD VNRACGSDRA  120
TALHCAASGG SESSPEIVKL LLDAGADAES LDATGNRPAN LIAPAFDSSS KSRRKTLELL  180
LSGGERDELE LQIFSASLSA KEGSEKKEGS DKKEYPVDIS LPDINNGVYG TDEFRMYSFK  240
VKPCSRAYSH DWTECPFVHP GENARRRDPR KYPYSCVPCP EFRKGTCQKA DSCEYAHGVF  300
ESWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPVYAS TGSAMPSPKS YSSSALDMTS  360
MSPLALSSTS LPMPTVSTPP MSPLAAASSP KSGSLWQNKI NLTPPSLQLP ASADPSVLSQ  420
LHGLSVQPST PTQTGLQMRQ NMNHLRASYP SNIPSSPVRK PSAFGFDSSA AVAAAVMNSR  480
SAAFTKRSQS FIDRGASTHH LGLSSPSNPS CRVSSTLSDW SSPTGKLDWG VNGDELNKLR  540
KSASFGFRNN GVTASSPMAQ HEHVEPDVSW VHSLVKDVPS ERSEMFGGEK QQYDLSKEML  600
PPWVEQLYIE QEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g04450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504769.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A1S3UFN40.0A0A1S3UFN4_VIGRR; zinc finger CCCH domain-containing protein 29
STRINGXP_007141759.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-170C3H family protein