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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g04100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 322aa MW: 37991.6 Da PI: 5.1572 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.3e-17 | 9 | 99 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk++ s s +v+p f+++ g + +k+++l++ sgr+W vk r ++++++++GWk F ++n ++ Df++Fk+dg++ f +v Vradi06g04100.1 9 FFKIF--SPEKHSETMVIPSCFVKSRgLGRRAIPKDIILRNVSGRVWCVKT--RLVGQKMYFGEGWKVFQEENCIRKADFMLFKYDGTNVF--KVV 98 89999..666666679*******99984556799*****************..88888899*************************99888..555 PP E CS B3 96 v 96 + Vradi06g04100.1 99 I 99 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-20 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.042 | 7 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-18 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-16 | 8 | 100 | No hit | No description |
Pfam | PF02362 | 2.0E-13 | 9 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-15 | 9 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-7 | 194 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-7 | 263 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.033 | 279 | 319 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTTAAKEYFF KIFSPEKHSE TMVIPSCFVK SRGLGRRAIP KDIILRNVSG RVWCVKTRLV 60 GQKMYFGEGW KVFQEENCIR KADFMLFKYD GTNVFKVVIL EQSSRCERRE VEEDEVIDIT 120 GEEENENSED YMMEDEEDID DEDEYYHDDN YTEIEEESEE EHVRSKSHHS RASNRDAEDP 180 HLEDYEFDPQ MYIQHENPYF EAKLYKNRPN ELHVPANILR DRSLTFPEKI TLSRCRCFQS 240 EDTQRKELRN NHCGFSRQTQ MYSKVTKVSE WQDGRVCIKG WTSFCTKNKI KEHDVCICEI 300 VLGKDKIVRT IQVHVLGARN G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g04100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502983.1 | 0.0 | B3 domain-containing protein REM20-like | ||||
TrEMBL | A0A1S3UAC2 | 0.0 | A0A1S3UAC2_VIGRR; B3 domain-containing protein REM20-like | ||||
STRING | XP_007141725.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-14 | B3 family protein |