PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g03760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 426aa    MW: 46528.1 Da    PI: 7.7859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g03760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-105479126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C +++rtG C yG++C+++H+
  Vradi06g03760.1 54 PGEPDCLYYLRTGMCGYGSNCRYHHP 79
                     5789*********************8 PP

2zf-CCCH37.83.1e-1297122227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C +f++tGtCkyG++Ck++H++
  Vradi06g03760.1  97 GQPDCEYFLKTGTCKYGSTCKYHHPK 122
                      5799********************96 PP

3zf-CCCH38.12.6e-12145167527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C++++rtG Ck+G  CkF+H++
  Vradi06g03760.1 145 SCPYYMRTGSCKFGVACKFHHPQ 167
                      6********************97 PP

4zf-CCCH406.3e-13279304227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++Cr+f+ tGtCkyG+ CkF+H++
  Vradi06g03760.1 279 DQPECRYFMSTGTCKYGSDCKFHHPK 304
                      689*********************96 PP

5zf-CCCH322.1e-10322346226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C++++ +G Ck+G++CkF H+
  Vradi06g03760.1 322 GQAVCSYYRIYGMCKFGPTCKFDHP 346
                      7899********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9865381IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-75579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-55880IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.78895123IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-1097122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5101122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6139168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638140168IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4142167IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10144167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5145168IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624277305IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-11279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6283304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5318346IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544320348IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7322346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPENRQVLRN ADSTPSGDNI EGGADFSEAI RRLKINDNWD RDAAAQSTQY PDRPGEPDCL  60
YYLRTGMCGY GSNCRYHHPA HISIGSHYGE ELPQRTGQPD CEYFLKTGTC KYGSTCKYHH  120
PKDRRGAAPV SFNTLGLPMR QEEKSCPYYM RTGSCKFGVA CKFHHPQHAS IGAYPLAGSP  180
TSTIIPTSGL PYAGGFPAWS AVPRMSYLSG QGVQSYVPPF LSSSQGIIPV QSWNNYMGSM  240
NPTMPTGYLG SNLVYDFMNL GESLFGGQAI NSALPNRPDQ PECRYFMSTG TCKYGSDCKF  300
HHPKERISQS LINPLGLPVR PGQAVCSYYR IYGMCKFGPT CKFDHPVLTI PQNYGLTSPA  360
LALDAPLITN QRGLSSVQPP ETSPSKLSSD NKLQHSDAKA ATEDSSKQAD TTPNSFPASS  420
EPLHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g03760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505308.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A1S3UH040.0A0A1S3UH04_VIGRR; zinc finger CCCH domain-containing protein 3 isoform X1
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-119C3H family protein