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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g03760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 46528.1 Da PI: 7.7859 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.4e-10 | 54 | 79 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ Vradi06g03760.1 54 PGEPDCLYYLRTGMCGYGSNCRYHHP 79 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.8 | 3.1e-12 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +f++tGtCkyG++Ck++H++ Vradi06g03760.1 97 GQPDCEYFLKTGTCKYGSTCKYHHPK 122 5799********************96 PP | |||||||
3 | zf-CCCH | 38.1 | 2.6e-12 | 145 | 167 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ Vradi06g03760.1 145 SCPYYMRTGSCKFGVACKFHHPQ 167 6********************97 PP | |||||||
4 | zf-CCCH | 40 | 6.3e-13 | 279 | 304 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ CkF+H++ Vradi06g03760.1 279 DQPECRYFMSTGTCKYGSDCKFHHPK 304 689*********************96 PP | |||||||
5 | zf-CCCH | 32 | 2.1e-10 | 322 | 346 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G Ck+G++CkF H+ Vradi06g03760.1 322 GQAVCSYYRIYGMCKFGPTCKFDHP 346 7899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-7 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 58 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-7 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.788 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 139 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 144 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-5 | 145 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 277 | 304 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.624 | 277 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-11 | 279 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-7 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-6 | 283 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 318 | 346 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 320 | 347 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.544 | 320 | 348 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-7 | 322 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MPENRQVLRN ADSTPSGDNI EGGADFSEAI RRLKINDNWD RDAAAQSTQY PDRPGEPDCL 60 YYLRTGMCGY GSNCRYHHPA HISIGSHYGE ELPQRTGQPD CEYFLKTGTC KYGSTCKYHH 120 PKDRRGAAPV SFNTLGLPMR QEEKSCPYYM RTGSCKFGVA CKFHHPQHAS IGAYPLAGSP 180 TSTIIPTSGL PYAGGFPAWS AVPRMSYLSG QGVQSYVPPF LSSSQGIIPV QSWNNYMGSM 240 NPTMPTGYLG SNLVYDFMNL GESLFGGQAI NSALPNRPDQ PECRYFMSTG TCKYGSDCKF 300 HHPKERISQS LINPLGLPVR PGQAVCSYYR IYGMCKFGPT CKFDHPVLTI PQNYGLTSPA 360 LALDAPLITN QRGLSSVQPP ETSPSKLSSD NKLQHSDAKA ATEDSSKQAD TTPNSFPASS 420 EPLHD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g03760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097669 | 0.0 | BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505308.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | A0A1S3UH04 | 0.0 | A0A1S3UH04_VIGRR; zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
STRING | XP_007141660.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-119 | C3H family protein |