PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g01150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 404aa    MW: 46244.3 Da    PI: 6.9847
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g01150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-08164187327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++f + G+Ck+G++C+F Hg+
  Vradi06g01150.1 164 MKVCHYFNK-GFCKHGNNCRFYHGE 187
                      679******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-5161187IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4161187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6162187IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5163187IPR000571Zinc finger, CCCH-type
PfamPF128724.3E-9208280IPR025605OST-HTH/LOTUS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDISRCTRIV FDKIHKFEPE YARKIIGYLL LQDHGELEMA KLASYPDYYI REVAFQAKRE  60
LLRLSAKPPD MLPISHMVNP QQGYSHLALM SPRTPTTPNF PPPLYWDPQP VGNINPEFMA  120
MNYMDSVIEL QKQTQLCSLE NHVDAVKTGT VGVANGRRFS EYPMKVCHYF NKGFCKHGNN  180
CRFYHGEVGP EMYGSDASGE DQVISPGSLA QLEKEIIELL RSRNDAISIA SLPMAYYDRY  240
KKVLQADGYL TESQRHGKSG YSLTKLLARL KNSIRLIVRK YTDRLEHTVC FSPHCVDTDS  300
ELNSTPRSLG NHRSFRRQLQ EQEQALEHER RNLAQLQFSS QPLSSSPHFG FSLDETKVSD  360
DHFNLQPPEE SFRFPLHAKS IHTDDNFSDE ERYASISNIA FVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g01150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022637522.10.0zinc finger CCCH domain-containing protein 18 isoform X1
RefseqXP_022637523.10.0zinc finger CCCH domain-containing protein 18 isoform X1
RefseqXP_022637524.10.0zinc finger CCCH domain-containing protein 18 isoform X1
RefseqXP_022637525.10.0zinc finger CCCH domain-containing protein 18 isoform X2
TrEMBLA0A1S3UA070.0A0A1S3UA07_VIGRR; zinc finger CCCH domain-containing protein 18 isoform X2
TrEMBLA0A3Q0F0K50.0A0A3Q0F0K5_VIGRR; zinc finger CCCH domain-containing protein 18 isoform X1
STRINGXP_007142384.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177