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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g00660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SAP | ||||||||
Protein Properties | Length: 366aa MW: 41504.2 Da PI: 6.5099 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 516.7 | 1.1e-157 | 1 | 363 | 91 | 455 |
SAP 91 llwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvs 184 +lw++ltrriWrrt ++rdtW+ eyi +hrta+nf+t+r s++t++fdp+ ++ l+Crclalsd+ la+Gf+dG+vr+fdlet hvs Vradi06g00660.1 1 MLWEHLTRRIWRRTFRVRDTWHAEYINWHRTATNFETGRLSFMTPRFDPS-----EHRRGLICRCLALSDTRLACGFVDGTVRVFDLETYDHVS 89 59***********************************************7.....35689********************************** PP SAP 185 tflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaetee 278 t+l++h++++G++sr+vsGi+i+ds ++fa+ldGdi+v++i+++g+++arra+ G v+n G+lv faG+ r wvGl+aG++ af++W+ae+ e Vradi06g00660.1 90 TYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHGQSQARRAVSGFVMNSGVLVAFAGTRRRWVGLFAGIAEGAFQVWNAESGE 183 ********************************************************************************************** PP SAP 279 lvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrve 372 + f+GG+ltdPe+vmGWhmltel++ vGrvrvte e++vaCtslrl++f+ n++v+lr+e +++G++vss+d+s+ea+vvv++ Gv+tv rv Vradi06g00660.1 184 RLFLGGTLTDPETVMGWHMLTELVDPVGRVRVTEDEFVVACTSLRLICFNAWNPEVLLRDEMSASGFVVSSMDVSSEAFVVVERDGVGTVWRVR 277 ********************************************************************************************** PP SAP 373 nleevcrfrvrg.aqrgvlgCvnggyalvyagg...vlrvWeiekkeg.ylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455 ++e ++rf++r+ + rg++gC+n+gy+++y++ lrvW+ie++eg +++ + r+gevn++v ddrhva+ss+ +i+lldfg+q Vradi06g00660.1 278 TMELMSRFELRSsWVRGLWGCMNLGYVVTYSPNprpFLRVWNIEQEEGrLCVRVFLRAGEVNSMVGDDRHVAISSN--NINLLDFGVQ 363 ************9*******************9999*********9999************************986..69******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.130.10.10 | 8.1E-13 | 50 | 116 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 7.14E-14 | 58 | 115 | IPR017986 | WD40-repeat-containing domain |
SuperFamily | SSF50978 | 7.14E-14 | 164 | 353 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 8.1E-13 | 165 | 354 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0030163 | Biological Process | protein catabolic process | ||||
GO:0046622 | Biological Process | positive regulation of organ growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MLWEHLTRRI WRRTFRVRDT WHAEYINWHR TATNFETGRL SFMTPRFDPS EHRRGLICRC 60 LALSDTRLAC GFVDGTVRVF DLETYDHVST YLSDHGHLFG PYSRSVSGII ITDSDITFAR 120 LDGDIYVDAI NVHGQSQARR AVSGFVMNSG VLVAFAGTRR RWVGLFAGIA EGAFQVWNAE 180 SGERLFLGGT LTDPETVMGW HMLTELVDPV GRVRVTEDEF VVACTSLRLI CFNAWNPEVL 240 LRDEMSASGF VVSSMDVSSE AFVVVERDGV GTVWRVRTME LMSRFELRSS WVRGLWGCMN 300 LGYVVTYSPN PRPFLRVWNI EQEEGRLCVR VFLRAGEVNS MVGDDRHVAI SSNNINLLDF 360 GVQNP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g00660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502884.1 | 0.0 | transcriptional regulator STERILE APETALA | ||||
TrEMBL | A0A1S3UA98 | 0.0 | A0A1S3UA98_VIGRR; transcriptional regulator STERILE APETALA | ||||
STRING | XP_007142480.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7687 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 2e-83 | SAP family protein |