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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g23530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 191aa MW: 21536.9 Da PI: 8.4291 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.5 | 1.4e-41 | 69 | 145 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e C adl+ ak+yhrrhkvCe hskap v+v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a Vradi05g23530.1 69 CQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNA 145 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.0E-35 | 62 | 130 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.06 | 66 | 143 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-37 | 67 | 147 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-32 | 69 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEIKSTDRRQ VSIEKVRRDN PIEVEDEEEE EDESVAGGEG CLAEDERKKG GAGGGRRGST 60 GGGVSPPSCQ AEMCGADLTV AKRYHRRHKV CELHSKAPFV MVAGMRQRFC QQCSRFHELA 120 EFDEAKRSCR RRLARHNERR RKSNAETCNE GCSSSKGQHP TESLCRNADD WGRIQMNMAR 180 NSGYRSFHFR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 55 | 142 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g23530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098928 | 0.0 | BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501689.1 | 1e-138 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38741 | 5e-39 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A1S3U6T1 | 1e-137 | A0A1S3U6T1_VIGRR; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_007149482.1 | 1e-106 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 2e-28 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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