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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g20420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 802aa MW: 89442.5 Da PI: 6.5972 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.1 | 2.3e-21 | 148 | 203 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Vradi05g20420.1 148 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 203 7999************************************************9877 PP | |||||||
2 | START | 225.2 | 1.9e-70 | 319 | 540 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++el+k+a+ +ep+W +s e++n+de++++f+ +++ +s+ea+r++gvv+ +l++lv+++ld++ qW+e+++ ka+t++ Vradi05g20420.1 319 NQALEELIKMATMGEPLWLRSFetgrEILNYDEYVKEFAVENSssgkpkRSIEASRDTGVVFVDLPRLVQSFLDVN-QWKEMFPclisKAATVD 411 67999****************99***************9888899*******************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 vi++g ga+qlm+ae+q+l+p+vp R+++fvR+++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv+wveh Vradi05g20420.1 412 VICNGegpnrnGAVQLMFAEMQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHL 504 ***********************************************************98.9******************************* PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ +h+l+r +v+sgla+ga++w tlq qce+ Vradi05g20420.1 505 ECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCER 540 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-23 | 135 | 199 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-20 | 140 | 206 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 145 | 205 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-19 | 147 | 209 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-18 | 148 | 203 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.28E-17 | 152 | 203 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 180 | 203 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.57 | 307 | 543 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.69E-32 | 310 | 540 | No hit | No description |
CDD | cd08875 | 3.31E-110 | 312 | 539 | No hit | No description |
SMART | SM00234 | 1.0E-70 | 316 | 540 | IPR002913 | START domain |
Pfam | PF01852 | 7.1E-56 | 319 | 540 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.8E-4 | 366 | 535 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.18E-14 | 562 | 762 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
SSFLCFYILK SILRYVSFSL SLFFPTQHKL HHFNLFFHSS SSPMGADMSN NPPPTSHAKD 60 FFASPALSLS LAGIFRHAGV AAEAEAATSN MEVEEWEEGS GGGERLEEIS SENSGPTRSR 120 SEDDFEGEGE HEDADADADG DRKKKKKRKK YHRHTADQIR EMEALFKESP HPDEKQRQQL 180 SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK LKEKNKTLRE TINKACCPTC 240 GVATTSRDGA MPTEEQQLRI ENAKLKAEVE KLRAALGKYA PGSTSPSCSS GHDQENRSSL 300 DFYTGIFGID NSRIMDIVNQ ALEELIKMAT MGEPLWLRSF ETGREILNYD EYVKEFAVEN 360 SSSGKPKRSI EASRDTGVVF VDLPRLVQSF LDVNQWKEMF PCLISKAATV DVICNGEGPN 420 RNGAVQLMFA EMQMLTPMVP TREVYFVRFC KQLSAEQWAI VDVSIDKVED NIDASLVKCR 480 KRPSGCIIED KSNGHCKVIW VEHLECQKSA VHSLYRTIVN SGLAFGARHW ITTLQLQCER 540 LVFFMATNVP MKDSTGVATL AGRKSILKLA QRMTWSFCHA IGASSFHTWT KVTSKNGEDI 600 RISSRKNLND PGEPLGLILC AVCSVWLPVS QNVLFDFLRD ETRRSEWDIM SSGGTVQSIA 660 NLSKGQDRGN VVTIQTIKLK ENSVWILQDS CTNPYESMVV YASVDISGIQ SVMTGCDSSN 720 LAILPSGFSI IPDGLESRPL VITSRQEEKY TEGGSLFTMA FQILTNASPT AKLTVESVDS 780 VNTLVSCTLR NIRTCLQCEE G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | DRKKKKK |
2 | 141 | 149 | RKKKKKRKK |
3 | 143 | 148 | KKKKRK |
4 | 143 | 149 | KKKKRKK |
5 | 145 | 149 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g20420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031171 | 0.0 | KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498860.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A1S3TYL6 | 0.0 | A0A1S3TYL6_VIGRR; homeobox-leucine zipper protein GLABRA 2 | ||||
STRING | XP_007150635.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4714 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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