PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g20210.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 279aa MW: 31725.3 Da PI: 5.1598

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g20210.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	6e-15	47	131	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ +l+r++l+ W++vsk + + ++er+ +qC+++++ l+k+ykk+k+ ++ ++ +++yf++++ Vradi05g20210.1 47 WTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVaQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQES-DGGDCKWVYFKRMD 131 ***********************************455789********************9996.666669*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-21	46	133	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-4	47	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDGIEDDASY HPNPYRIISH QRASSAAAPV PTAPKPSSGG RNSLTDWTEH ETFVLLDAWG 60 DTFLQLGRKS LRCEEWQQVS KMVAQVSKIE RTDTQCRNRL DTLKKKYKKE KAKFQESDGG 120 DCKWVYFKRM DELMSSPPQQ VGISCGFDSG DYVFMNPGVY LNQANGLDEL RDSPDNVEST 180 GEEGSDGLQL QAKKRKGRSS DEASSFSLLA DSIQKFSRIY EKIENNKRQQ MMELEKMRMD 240 FHKELETQKR QILGNLQSEI SKLEQRNDEN EDSAENGM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g20210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014499502.1	0.0	trihelix transcription factor ASIL1-like
Refseq	XP_022637133.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A1S3U0G0	1e-179	A0A1S3U0G0_VIGRR; trihelix transcription factor ASIL1-like
STRING	XP_007150667.1	1e-145	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-63	Trihelix family protein