PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g16830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 481aa    MW: 53960.1 Da    PI: 4.5254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g16830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08146165525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C f+++ G C yG+rC++ H
  Vradi05g16830.1 146 ICTFYQK-GVCAYGSRCRYDH 165
                      7******.************* PP

2zf-CCCH18.53.5e-06258278526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ fa+ G C++G++C+ +Hg
  Vradi05g16830.1 258 ICS-FAAAGNCPRGEQCPHIHG 278
                      677.**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.676113140IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4114139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7115138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5144165IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5146165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4146165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.465253280IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037254279IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.8E-13314386No hitNo description
Gene3DG3DSA:3.30.40.105.4E-10315381IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.18E-4321381No hitNo description
PfamPF000974.5E-7322379IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386322380IPR001841Zinc finger, RING-type
SMARTSM001847.1E-7322379IPR001841Zinc finger, RING-type
PROSITE patternPS005180346355IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS501039.911409434IPR000571Zinc finger, CCCH-type
SMARTSM003569409437IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNEMLDMLSD VDLTSAEYLS IMRDSDLFDD MDPFGIIDIS DRLAGESDLC LGPFDSDEEG  60
VDFFQMAALS EALVSGVDDF GLEDFDDEEF NPMEAALLSM MMHSDIDEDE EEYSDEVLCK  120
FFAHGACLKG EHCEYSHDWK DPPNNICTFY QKGVCAYGSR CRYDHIKASQ AQSSIPSSSA  180
IEHHTLVSDT GAFGNIITTS NGVGTAAELS LSSSPYILPS EPAWNHELVW NPEIEYYEIL  240
GEDNVGQSII TSPSELSICS FAAAGNCPRG EQCPHIHGDL CPTCGKHCLH PFRPEEREEH  300
MKTCESRHKY LDALKRSQEI ECSVCLERVL SKPILAERKF GLLSECDHPF CISCIRNWRS  360
SNPTLGMDVN STLRACPICR KLSYFVIPSV VWYSTTEEKQ EIIDKYKEKL KSIDCKHFDF  420
GDGNCPFGSS CFYKVVGFPF QHASKMNGAV CMFKILAKKR HPSMSKVIFI LQVKLLFLFL  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g16830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501909.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-144C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S3U7F80.0A0A1S3U7F8_VIGRR; putative RING-type E3 ubiquitin transferase C3H69
STRINGXP_007148855.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-135C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]