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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g16830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 53960.1 Da PI: 4.5254 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 1.9e-08 | 146 | 165 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C f+++ G C yG+rC++ H Vradi05g16830.1 146 ICTFYQK-GVCAYGSRCRYDH 165 7******.************* PP | |||||||
2 | zf-CCCH | 18.5 | 3.5e-06 | 258 | 278 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ fa+ G C++G++C+ +Hg Vradi05g16830.1 258 ICS-FAAAGNCPRGEQCPHIHG 278 677.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.676 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-4 | 114 | 139 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-7 | 115 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.38 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0024 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 144 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 146 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 146 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.465 | 253 | 280 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0037 | 254 | 279 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 4.8E-13 | 314 | 386 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 5.4E-10 | 315 | 381 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 1.18E-4 | 321 | 381 | No hit | No description |
Pfam | PF00097 | 4.5E-7 | 322 | 379 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.386 | 322 | 380 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 7.1E-7 | 322 | 379 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 346 | 355 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 9.911 | 409 | 434 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9 | 409 | 437 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MNEMLDMLSD VDLTSAEYLS IMRDSDLFDD MDPFGIIDIS DRLAGESDLC LGPFDSDEEG 60 VDFFQMAALS EALVSGVDDF GLEDFDDEEF NPMEAALLSM MMHSDIDEDE EEYSDEVLCK 120 FFAHGACLKG EHCEYSHDWK DPPNNICTFY QKGVCAYGSR CRYDHIKASQ AQSSIPSSSA 180 IEHHTLVSDT GAFGNIITTS NGVGTAAELS LSSSPYILPS EPAWNHELVW NPEIEYYEIL 240 GEDNVGQSII TSPSELSICS FAAAGNCPRG EQCPHIHGDL CPTCGKHCLH PFRPEEREEH 300 MKTCESRHKY LDALKRSQEI ECSVCLERVL SKPILAERKF GLLSECDHPF CISCIRNWRS 360 SNPTLGMDVN STLRACPICR KLSYFVIPSV VWYSTTEEKQ EIIDKYKEKL KSIDCKHFDF 420 GDGNCPFGSS CFYKVVGFPF QHASKMNGAV CMFKILAKKR HPSMSKVIFI LQVKLLFLFL 480 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g16830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501909.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 | ||||
Swissprot | E0X9N4 | 1e-144 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1S3U7F8 | 0.0 | A0A1S3U7F8_VIGRR; putative RING-type E3 ubiquitin transferase C3H69 | ||||
STRING | XP_007148855.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10211 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-135 | C3H family protein |
Publications ? help Back to Top | |||
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