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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g16150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 191aa MW: 21806.6 Da PI: 9.9152 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 36 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ ++k+ + g ++ ++ Aa+a++ a++k++g Vradi05g16150.1 36 SPYRGVTRHRWTGRYEAHLWDkTSWNQaQNKKGRQGAYDDEDAAARAYDLAALKYWG 92 68*******************77779999988888*****99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-15 | 36 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.413 | 37 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-20 | 37 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 38 | 49 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-12 | 38 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-8 | 38 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAAKTSHKTL CVDSPMLKKK RPRKTIPRDT PLPRTSPYRG VTRHRWTGRY EAHLWDKTSW 60 NQAQNKKGRQ GAYDDEDAAA RAYDLAALKY WGPETLLNFP VSNYEEQLKE MEDQSKEEYI 120 GSLRRKSSGF SRGVSKFRGV ARWEARIGRV FGNKYLYLGT YAGIYTDTDD IIFGDLTSIA 180 SPIFHCDLNA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g16150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 6e-65 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500296.1 | 1e-101 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 4e-70 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1S3U2Q8 | 1e-100 | A0A1S3U2Q8_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | Solyc12g010490.1.1 | 3e-81 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 7e-68 | AP2 family protein |
Publications ? help Back to Top | |||
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