PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g14520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 217aa    MW: 24558.9 Da    PI: 6.3968
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g14520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2180140257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t+ ql++Le+ F + n +ps+++++e++ +l    +++e++V++WFqNrRa+ k+
  Vradi05g14520.1  80 RQRWTPTPLQLQILERIFDEgNGTPSKQKIKEITIELgqhgQISETNVYNWFQNRRARSKR 140
                      89*****************99**************************************97 PP

2Wus_type_Homeobox100.21.5e-3279142265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq
    Vradi05g14520.1  79 ARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITIELGQHGQISETNVYNWFQNRRARSKRKQ 142
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-1776143IPR009057Homeodomain-like
PROSITE profilePS5007114.91676141IPR001356Homeobox domain
SMARTSM003892.3E-1578145IPR001356Homeobox domain
SuperFamilySSF466898.55E-1979142IPR009057Homeodomain-like
CDDcd000862.60E-1580142No hitNo description
PfamPF000462.2E-1980140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEAEHHQDAS IAIGSLYVKV MTDEQMELLR QQISVYATIC EQLVEMHKAI TTQQDLAGLR  60
LGNLYCDPLM ACSGHKITAR QRWTPTPLQL QILERIFDEG NGTPSKQKIK EITIELGQHG  120
QISETNVYNW FQNRRARSKR KQLAPAANVA EPETETEVDS PREKKIRAAE SVQVVQPFEN  180
SSPHRIKDMY IHSPDLGFEQ LMSKIDVAGC YGSYFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g14520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500511.11e-163WUSCHEL-related homeobox 13
SwissprotQ5QMM36e-80WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1S3U3C61e-162A0A1S3U3C6_VIGRR; WUSCHEL-related homeobox 13
STRINGXP_007136031.11e-146(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-74WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]