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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g13840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | E2F/DP | ||||||||
Protein Properties | Length: 458aa MW: 52211.7 Da PI: 6.1352 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.7 | 1.5e-26 | 176 | 241 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++ +++g+++ln+ a+ L +v ++RRiYDi+NVLe+++liek++kn+i+wkg Vradi05g13840.1 176 RYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIQWKG 241 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-28 | 173 | 242 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.4E-17 | 176 | 239 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.1E-34 | 176 | 241 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.7E-25 | 178 | 241 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 9.39E-35 | 252 | 360 | No hit | No description |
SuperFamily | SSF144074 | 1.86E-25 | 253 | 360 | No hit | No description |
Pfam | PF16421 | 4.9E-24 | 257 | 357 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
AIQSHLISIS HHSLFTQQHI SFLFVSKFII SFSPLFHFPV LYNSVAVTSL TPALSFCFPN 60 PFFSLLMSTS GQDHHQPHDP PHPSQFKFHL LHSPSHISPL SHSIFPNFLP SQRYESSHRS 120 NLEVVSDTSK TVYLPSPVQT QSTERGKQNV KSRNTKSGTH RPSAGSPNST VGNNCRYDSS 180 LGLLTKKFVS LIQDARDGTL DLNKTAEILE VQKRRIYDIT NVLEGVGLIE KTSKNHIQWK 240 GCDGLGPREL ENQINSLKAE VESLYARECE LDDCIRKKQE LLRNLEESES SQKYLFLTKE 300 EILSLPCFQN QEIIAIKAPK ASFIEVPDPD EVESVFRQRQ YKMIVRSATG PIYLYLLSKD 360 DCKYEDDSVK RVKLMDPSWN SEQCRKRGVG LLESHDDKQN TSESFNFHES QASGIQEITP 420 TDFEMEDDYW FQSDPGVRLT QLWENEPIIP IEELQDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-25 | 172 | 247 | 3 | 76 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00190 | DAP | Transfer from AT1G47870 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g13840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500615.1 | 0.0 | transcription factor E2FC | ||||
TrEMBL | A0A1S3U3L4 | 0.0 | A0A1S3U3L4_VIGRR; transcription factor E2FC | ||||
STRING | XP_007136084.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11885 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.1 | 7e-89 | E2F/DP family protein |