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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g11910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 260aa MW: 28819.2 Da PI: 8.0679 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.7e-10 | 82 | 102 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G Ck+Gd+C+FaHg Vradi05g11910.1 82 ACPDYRK-GNCKRGDTCQFAHG 102 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.46E-5 | 76 | 106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 77 | 104 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-8 | 77 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-7 | 78 | 104 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-8 | 81 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 41 | 112 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTPNVQIPLW DSAAADGGPV SPFSPNAPDT VSFSTDHFRM FHFKVLTCPR GRAHDWTECP 60 YAHPAEKARR RDPRKFLYSA TACPDYRKGN CKRGDTCQFA HGVFECWLHP SRYRTHLCKD 120 GTNCRRRVCF FAHTNDQLRL APDSSSLSSP TSVITSSFFD SPPSSSYVHN IQEIVSSMRN 180 VQLEDGLFSG LTRCVFGSTS GGILSGNGCE EEEPAMERVE SGRDIRARIY AKLSRENSFA 240 GSAPHVGWVS EQVNGFRGL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g11910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499983.1 | 0.0 | zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | O82199 | 1e-74 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A1S3U1S3 | 0.0 | A0A1S3U1S3_VIGRR; zinc finger CCCH domain-containing protein 23 | ||||
STRING | XP_007136803.1 | 1e-142 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 2e-73 | C3H family protein |
Publications ? help Back to Top | |||
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