PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g11810.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 339aa    MW: 38054.1 Da    PI: 6.2866
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g11810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-092572951854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Vradi05g11810.1 257 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 295
                      5887779******************************88 PP
2BELL56.95.2e-191461981871
             BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                      eVd rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++ 
  Vradi05g11810.1 146 EVDSRYSQCLDEIHTVVSAFHAATELDP-QIHAHFALQTISVLYKDLRERISNY 198
                      8***************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-588197IPR006563POX domain
PfamPF075265.5E-14146196IPR006563POX domain
PROSITE profilePS5007111.078236299IPR001356Homeobox domain
SMARTSM003896.9E-6239303IPR001356Homeobox domain
CDDcd000864.59E-11239300No hitNo description
SuperFamilySSF466891.07E-15241308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-26242305IPR009057Homeodomain-like
PfamPF059204.6E-15256295IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYIAPLEISG RGDTVIDEIS QHPTSNPLIQ CYSLDLNNQS HIINGISMLS GEQGEPTSNV  60
HTDACFITPS TIADSCPLVT SRRKIIVGDA SNPMENSDFQ EHLVGGVPLT PASLAAILAD  120
RIGLEENLEN SAAALAPSIF STGALEVDSR YSQCLDEIHT VVSAFHAATE LDPQIHAHFA  180
LQTISVLYKD LRERISNYIL AMGSSFKKSC TEDSEWSIET SFLQKQWALQ QLKRKDQLWR  240
PQRGLPERSV SVLRAWMFQN FLHPYPKDAE KHLLAVKSGL TRSQVSNWFI NARVRLWKPM  300
IEEMYAEMNK RKACRNEEEI QNNHGNRISM SNQRFNVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-15245303563Homeobox protein Meis2
3k2a_B9e-15245303563Homeobox protein Meis2
4xrm_A1e-14245303563Homeobox protein Meis2
4xrm_B1e-14245303563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g11810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636652.11e-139homeobox protein ATH1 isoform X2
SwissprotP487317e-84ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A3Q0F2K01e-138A0A3Q0F2K0_VIGRR; homeobox protein ATH1 isoform X2
STRINGXP_007136819.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-86homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]