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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g08680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 320aa MW: 35737.5 Da PI: 6.1786 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 8.7e-18 | 205 | 239 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Vradi05g08680.1 205 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 239 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.5E-81 | 1 | 294 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.2E-17 | 199 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.769 | 199 | 235 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.6E-15 | 200 | 236 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.33E-15 | 201 | 263 | No hit | No description |
CDD | cd00202 | 1.02E-14 | 204 | 251 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 205 | 230 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 205 | 239 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEAQEFFQNT FYPQFPSDNI TPSNTNASTT DHFIVEDFFD FSNSDEAPLI DATFDSLPTD 60 HSSTLTNLDT TTNNSNFSAT DAHFSGDLSL PYDDLAELEW LSKFAEESFS SEDLQKLQLI 120 SGAGVQKDTT SETRDPNPAL FNPQVSVRGK ARSKRTRGPP CNWSSRLVVL SPNTMSSESS 180 HSDSGKKVAP RRRDVSEGSS EGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV 240 PEYRPAASPT FVLTKHSNSH RKVLELRRQK EMVRVQQQQL LHLQHQQNMM FDVPSNGEDY 300 LINQQWAPTS HTSSNLLLD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g08680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500589.1 | 0.0 | LOW QUALITY PROTEIN: GATA transcription factor 12 | ||||
Swissprot | P69781 | 9e-81 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A1S3U3L7 | 0.0 | A0A1S3U3L7_VIGRR; GATA transcription factor | ||||
STRING | XP_007137230.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 1e-80 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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