PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g07560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 276aa    MW: 30214.6 Da    PI: 7.0329
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g07560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17188224135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Vradi05g07560.1 188 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGT 224
                      *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.9E-105187IPR010399Tify domain
PROSITE profilePS5132012.0455186IPR010399Tify domain
PfamPF062001.6E-105586IPR010399Tify domain
PROSITE profilePS5101712.362120162IPR010402CCT domain
PfamPF062031.6E-15120162IPR010402CCT domain
PROSITE profilePS5011410.646182241IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16182235IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12182234No hitNo description
Gene3DG3DSA:3.30.50.102.8E-16186229IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-16187233No hitNo description
PROSITE patternPS003440188215IPR000679Zinc finger, GATA-type
PfamPF003203.4E-15188224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MYDPVNQIVP AEDNDASDQH IHYSSHTIED VGAVVEHVSA DSLYVPPPEI SIHDSSQLTL  60
SFRGQVYVFD AVTPDKAVQA VLLLLGGSEL TSGSQCAEEL SPQNHAGAAE FPARCSLPQR  120
VASLNRFRQK RKERCFDKKV RYSVRQEVAL RMHRNKGQFT SSKKQNGANS WGSDQESGQE  180
AVQSETSCTH CGTSSKSTPM MRRGPSGPRS LCNACGLFWA NRGTLRDLSK RNQELSIVPL  240
EQVGVGNNNN LDCLSIIPAQ HDNHVNDNKA LVSDR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g07560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968950.0BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499819.10.0GATA transcription factor 25
SwissprotQ9LRH61e-85GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S3U1E00.0A0A1S3U1E0_VIGRR; GATA transcription factor 25
STRINGXP_007136308.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-81GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]