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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g05780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 382aa MW: 42646.4 Da PI: 7.4143 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.4e-10 | 73 | 95 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Vradi05g05780.1 73 EDCAYYLKTGSCKFGFNCKFNHP 95 89********************9 PP | |||||||
2 | zf-CCCH | 21.7 | 3.4e-07 | 101 | 119 | 7 | 25 |
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++r+G Ck+G CkF+H Vradi05g05780.1 101 QYYLRSGGCKFGKACKFNH 119 59***************** PP | |||||||
3 | zf-CCCH | 37.1 | 5.4e-12 | 144 | 167 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++r+G Ck+G++CkF+H+ Vradi05g05780.1 144 EKECHYYMRNGSCKFGANCKFNHP 167 679********************9 PP | |||||||
4 | zf-CCCH | 29 | 1.8e-09 | 277 | 303 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++C+F+H++ Vradi05g05780.1 277 PGEPECSYFLKTGDCKFKSNCRFHHPK 303 5799*********************96 PP | |||||||
5 | zf-CCCH | 35.9 | 1.2e-11 | 325 | 349 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G+ CkF H+p Vradi05g05780.1 325 QNVCTYYSRYGICKFGPACKFDHPP 349 568********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.41E-6 | 68 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.957 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-8 | 73 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 75 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 101 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.878 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 142 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-5 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 144 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 147 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 276 | 303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.155 | 276 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 278 | 303 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 281 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 320 | 347 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 322 | 350 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 322 | 349 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 325 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 327 | 347 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGKTLSRTLD HDPQQSDLNH VAQDDDALNR ELQNKLDLKD VSESEDKDVE GVDSRDERSS 60 GRAQQYPLRP EAEDCAYYLK TGSCKFGFNC KFNHPLKRKN QYYLRSGGCK FGKACKFNHK 120 REKCSSANPI AELNFLGLPI RVGEKECHYY MRNGSCKFGA NCKFNHPDPT AGGGDSPSRY 180 DNGSSVSLQG VSQSSISSWS STRPLNESTP FVPMILSANP GVSPQSSEWD GYQAPVYLPE 240 RNMHLPSTYV MNNPVMETNV YMHHQQQVQV EEFPERPGEP ECSYFLKTGD CKFKSNCRFH 300 HPKNRITRLP PCSLSNKGLP LRPDQNVCTY YSRYGICKFG PACKFDHPPP STMNGLDQQS 360 SYSNSASVDV SENGGVSDGN Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g05780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-141 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498626.1 | 0.0 | zinc finger CCCH domain-containing protein 43 | ||||
Swissprot | Q9STM4 | 1e-127 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1S3TXX9 | 0.0 | A0A1S3TXX9_VIGRR; zinc finger CCCH domain-containing protein 43 | ||||
STRING | XP_007137964.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-119 | C3H family protein |
Publications ? help Back to Top | |||
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