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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g05750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 488aa MW: 54971.6 Da PI: 6.551 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.2e-13 | 54 | 144 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffk t+ d+l++ l++p f + +++ +k++ l+d++g++W+vk+ + g++ +++GW+ F + +gLk+g +v+ ++++ f Vradi05g05750.1 54 FFKFITRQDYLTT--LCIPPAFS-GIvaSMV---NKKINLNDSTGQQWKVKV--SEVNGSFAFGEGWSLFSSGHGLKVGYLLVLNYIKDLHF-- 137 7888888888887..89****97.5544333...468***************..888899**************************987666.. PP EEEEE-S CS B3 93 vvkvfrk 99 vk++++ Vradi05g05750.1 138 DVKIYDT 144 8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-17 | 48 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-17 | 48 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.321 | 52 | 145 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.67E-12 | 53 | 143 | No hit | No description |
SMART | SM01019 | 3.1E-6 | 54 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-10 | 54 | 143 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.67E-7 | 383 | 466 | No hit | No description |
SMART | SM01019 | 1 | 387 | 482 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.44E-10 | 413 | 467 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-9 | 414 | 484 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.023 | 421 | 487 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MGAPDLSHHV FEEGHLIEKR GKMGGEEHGV SVCAACTHNC LLFHQTKQTS PTSFFKFITR 60 QDYLTTLCIP PAFSGIVASM VNKKINLNDS TGQQWKVKVS EVNGSFAFGE GWSLFSSGHG 120 LKVGYLLVLN YIKDLHFDVK IYDTSACEKL GLPRKRNQKK RSRSKIGSPV RDSILVRQEL 180 DAPRQCSKFD LVVPQKAKEN GQDVLILDHS EEDPCHSKSL EFDQSHGDDG TMKSQNGDLI 240 VSNVDYESNI VENDAMIRSK NTMLEGVLST EVALDISEPL EADTYTYDKT LDSKIEENKA 300 ILSNREAQEC QFSKGLGEMK KLPVDMNPNL GSSMDEFHLT GEVSKKLKKE LVTLNEMEAT 360 GLPKEINGLL DSDIFNEDNA SHFKTTHVSC VVPHDNVFLE LPSCLPLIRK VKVDQQRKML 420 VFLRDPLRRL WPVYYHEKPH LKLLAHGWLD FSRANNIQPK DECIFETEVD PECKSKRILS 480 VQIVHNK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g05750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500538.1 | 0.0 | B3 domain-containing protein Os01g0905400 isoform X1 | ||||
TrEMBL | A0A1S3U3D6 | 0.0 | A0A1S3U3D6_VIGRR; B3 domain-containing protein Os01g0905400 isoform X1 | ||||
STRING | XP_007137956.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12476 | 28 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 8e-13 | B3 family protein |