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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g05430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 377aa MW: 41140.9 Da PI: 8.1593 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.5e-41 | 83 | 159 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+ Vradi05g05430.1 83 CLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 159 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.4E-32 | 80 | 144 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.701 | 80 | 157 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.85E-38 | 81 | 162 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-30 | 83 | 156 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDKASIPNID SMEEHNRFGV YRMEGEFSVD LKLGHVGNSG TESALAKFKD VAAGAGVSKV 60 ASSPSGSSKR ARAINSTTLT VSCLVDGCNS DLSNCRDYHR RHKVCELHSK SPEVTIGGLK 120 QRFCQQCSRF HSLEQFDERK RSCRKRLDGH NRRRRKPQPE PHTRPGSFLS NYQDFSGTQL 180 LPFSNPHVYP SSAMMSTPWS GGLVTSSADA RLHNQHHHQE LFLGSSQKEG KQVAFLHGNH 240 PSTGALSNQS LPFPSPSVCH TLLRSSPLSE SCGARSKMFC ESLTTTNSVH DTPCALSLLS 300 SSQTHTPGNG LNQMVQAPSM SLMQPLGLSL QDNSNLESVE RVLVPNGSDH CSSMYSLGSD 360 GSHCNEAPQL FPFQWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-28 | 83 | 156 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 155 | RKRSCRKRLDGHNRRRRK |
2 | 138 | 156 | RKRSCRKRLDGHNRRRRKP |
3 | 139 | 156 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g05430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498397.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X1 | ||||
TrEMBL | A0A1S3TX98 | 0.0 | A0A1S3TX98_VIGRR; squamosa promoter-binding-like protein 13A isoform X1 | ||||
STRING | XP_007137898.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 5e-67 | SBP family protein |