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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g04140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 339aa MW: 36941.3 Da PI: 7.0938 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.7 | 3.4e-40 | 53 | 113 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s Vradi05g04140.1 53 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 113 6899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-29 | 47 | 107 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-33 | 54 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGLSSLHVCM DSSDHWLQGT IHEESGMDSS SSPSGDMLTC SRPMIERRLR PPHDQALKCP 60 RCDSTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSAKKSNDH 120 PLVNTQISQT QPPPSSYHHN PKDLQLSFPD VQFSHLSNLL GTNAGSLGNP SFMEAKYGIG 180 MIENPRPIDF MMESKLEGII GSGSSRNFDF FGNSDMGMGA GLGDMHANAQ NGLPPNFHGL 240 CPSAFGGISM SLDGNNTANG ANNYLMDSCQ RLMLPYDANE DHNASIDVKP NPKQLLSLEW 300 QEQGCSDAGK DSFGYLNGPG SWTGMMNGYG SSTTNPLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g04140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499844.1 | 0.0 | dof zinc finger protein DOF5.6 | ||||
Swissprot | Q9FM03 | 1e-47 | DOF56_ARATH; Dof zinc finger protein DOF5.6 | ||||
TrEMBL | A0A1S3U1G8 | 0.0 | A0A1S3U1G8_VIGRR; dof zinc finger protein DOF5.6 | ||||
STRING | XP_007138074.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5092 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 2e-46 | Dof family protein |
Publications ? help Back to Top | |||
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