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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g02960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 1032aa MW: 113841 Da PI: 6.8875 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 7.8e-41 | 147 | 224 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Vradi05g02960.1 147 VCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 224 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-32 | 144 | 209 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.171 | 145 | 222 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.03E-38 | 146 | 226 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-29 | 148 | 221 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.27E-6 | 800 | 914 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.7E-5 | 802 | 915 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.77E-6 | 803 | 913 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1032 aa Download sequence Send to blast |
MEAQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTATQLNSV PSDCTSRQLF 60 PADPEILAAG DASNSLSSSY DDVNLAEGRR ELEKRRRGVA DEGGVEMNDG AGSLNLNLGV 120 QVYPIIEGEE KSGKKTKITG STLNRAVCQV EDCRADLSNA KDYHRRHKVC DMHSKASKAL 180 VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTHPDASVVN DGSVNEEKGS 240 SYLLMSLLRI LSNMHSNGSD NMTSQDVLSH LLRNLASLAG TINGRNIVSL LEGSQDLVKA 300 GTSGTAPNVP NTNSNGPETS RPVDTSTKMD NGVISQDPPE SMVQCEMTPA NGMPKGFIAS 360 GSDGIGSSKS PSLPQLSNAL LSRDSLPPYS VSAETTVGRI GLSNIDLNSA YDDVQDYVEN 420 TRNSRPPLPS GNGSLDNPLW VQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV 480 FKLFGKAPND FPHTLRSQIL NWLSHSPTEI ESYIRPGCII LTVYLRLENS AWEELCHNLG 540 SSLRKLAVPN DSFWRSGWIY TRVQHSVAFL YNGQVVLDVP LRFKSPQNCQ IFCVKPLAVS 600 SSSCVRFIVK GFNLFLSNTR LLCALEGKYL VQDNCYDLVD ADASIEHNEL QHLSFSCSIP 660 NVTGRGFIEV EDNGLSSCSF PFIVAEQEIC SEICKLENVI EAAETADDIQ MRTKLMEEKT 720 QALYFVQEMG WLLHRNRAKV RLGPVAPLQD CFHFNRFMWL VGFSMDHDWC AVMKKLLNII 780 FEGTVDIGEH TSVELALLKM DLLHKAVKRN CRPMVELLLK FVPANASDGG DSKEKQVNKS 840 PNRFIFRPDS VGPAGLTPLH VAASIHGLDN VLDALTDDPG LVGIEAWKSA QDTTGLTPYD 900 HASLRGYYSY IQLVQRKISN TCKSEHVLNI PGTLVDSNIK QKQSDGHRSS KVSSLQTEKI 960 ETTAMVRHCG VCQHKLAYGG MRSALVYRPA MLSMVAIAAV CVCVALLFKS SPKVYYVFQP 1020 FSWESLEYGS M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 147 | 221 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 222 | KRRRKTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g02960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501155.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X2 | ||||
TrEMBL | A0A1S3U559 | 0.0 | A0A1S3U559_VIGRR; squamosa promoter-binding-like protein 1 isoform X2 | ||||
STRING | XP_007138555.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |