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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g02690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-PHD | ||||||||
Protein Properties | Length: 714aa MW: 81658.7 Da PI: 9.0559 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.2e-10 | 501 | 543 | 11 | 53 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F++n p ++ +e L+k+lgL+ ++V+ WF+N R+ Vradi05g02690.1 501 AVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARY 543 5789*************************************97 PP | |||||||
2 | PHD | 39.7 | 1.1e-13 | 235 | 290 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+++fH+ Cl+++l++e++p g w+C+ C++k Vradi05g02690.1 235 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 290 699999954445********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.1E-14 | 227 | 292 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.9E-12 | 232 | 291 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.558 | 233 | 290 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 2.09E-29 | 235 | 287 | No hit | No description |
Pfam | PF00628 | 1.1E-10 | 235 | 290 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 3.8E-9 | 235 | 288 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 236 | 287 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 482 | 542 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.143 | 488 | 548 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-6 | 490 | 552 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-9 | 491 | 557 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.42E-7 | 496 | 543 | No hit | No description |
Pfam | PF00046 | 2.2E-7 | 501 | 543 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MRDAENLNKK GSGKSSYSKE QIKSKLFSSK LKASSTKNRR KEHKEKSRSH KLRVGTNTSK 60 KRVADSSIKA PLEDSSNKKV IIRKTLHKTD ENSSRMVSST KLQGRKNPHI SRKEGNGVDE 120 EAKIKKRKRN KKKSRQRDSM DHDDASRLRR RTRYLLIKMK LEQNLIDAYS GEGWKGQSRE 180 KIRPEKELLR AKKQILKCKL SIRDVIRQLD SLSSVGSIED SVIAPDGSVY HEHIFCANCK 240 LHEAFPDNDI ILCDGTCNRA FHQRCLNPPL DTENIPPGDQ GWFCKFCECK IEIIESTNAH 300 LGTQFSLDSS WQDIFKEEAA VPDGDIALLS PEEEWPSDDP EDDDYNPERK EDSHSINTEG 360 ADENASNDST SSLSLWSLNE ECPPVDEDLS RQYYSVNSFI DSDESGEIAC GRRQRKAVDY 420 KKLYDEMFGK DAPPCEQPSE DEDWGPGKRK RREKESDAVN TLMTLHESEN KHPNNESSDR 480 IREGSSGLQI RRSCFRIPLD AVEKLRQVFA ENELPPRSVK EGLSKELGLD PEKVSKWFKN 540 ARYLALKTRK YQSEEQLQSF TSQISKHSTS PNMEKDEFLK SQAPKITLVH SQKDGQSITG 600 QEKNKLCNSL LKRRKQKPSP PLSRENSNKE SMEMSDDVNL KKLLKERKKR VNFIYEGDSQ 660 IAELEFERLS KVKSKVDSMK QKLNEVQNCR AKGSTNEPSI IYVPTAQLRE KVE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 130 | IKKRKRNK |
2 | 124 | 131 | KKRKRNKK |
3 | 448 | 453 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g02690.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498891.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
Refseq | XP_022636192.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
Swissprot | P48785 | 1e-154 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A1S3TYQ6 | 0.0 | A0A1S3TYQ6_VIGRR; pathogenesis-related homeodomain protein | ||||
STRING | XP_007138774.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-153 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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