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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g02480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 313aa MW: 34781.6 Da PI: 10.1023 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.8 | 1.4e-18 | 178 | 211 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG+++rk + Vradi05g02480.1 178 CADCHTTKTPLWRTGPTGPKSLCNACGIRQRKAR 211 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.033 | 172 | 208 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.7E-18 | 172 | 223 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-12 | 175 | 213 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 176 | 211 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.11E-11 | 177 | 207 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.7E-16 | 178 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MHEPMIPTYR YSVVSSPMSI DLNEDHTHTL FSTIHQVSSS SSSLSTSILF NPDQAQGGFC 60 YCESKHLQEA QKIVCFGGSC DHQAEKIEKR SDLELRLWEK EECDNLQGED SSTNWMPPKM 120 RMVRKIMVSD QTGSHKADIS NSKQMKAKEK NPTLSQLVTD DSNYNSSSNN NSVTARVCAD 180 CHTTKTPLWR TGPTGPKSLC NACGIRQRKA RRAIAAAATT AKGTNRLEAK KSEVKKGKKL 240 HSKGKKPKTG SAPVLVKKKR KPAKHRKKFS AFEDLSVRFQ QVFPQDEKEA AILLMALSHG 300 LLHGFPSDRY IS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 260 | KKPKTGSAPVLVKKKRK |
2 | 256 | 261 | KKKRKP |
3 | 256 | 267 | KKKRKPAKHRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g02480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499949.1 | 0.0 | GATA transcription factor 21 | ||||
TrEMBL | A0A1S3U1T2 | 0.0 | A0A1S3U1T2_VIGRR; GATA transcription factor 21 | ||||
STRING | XP_007138732.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 9e-17 | GATA family protein |