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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g00640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 297aa MW: 32610.8 Da PI: 5.1572 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.5 | 1.3e-12 | 127 | 154 | 25 | 52 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQk 52 +A+Pk+ilelm+v+gLt+e+v+SHLQk Vradi05g00640.1 127 SEAVPKKILELMNVPGLTRENVASHLQK 154 68*************************9 PP | |||||||
2 | Response_reg | 28.6 | 7e-11 | 55 | 108 | 55 | 109 |
TSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 55 gmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +mdG++ll++i e +lp+i+++a + ++ + + + Ga d+l Kp+ +e+l + Vradi05g00640.1 55 DMDGFKLLEHIGLEM-DLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKN 108 7**********6654.8**********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 17.262 | 1 | 114 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-4 | 23 | 53 | No hit | No description |
SuperFamily | SSF52172 | 1.99E-19 | 28 | 118 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 0.0035 | 29 | 110 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.25E-12 | 32 | 114 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 9.7E-19 | 55 | 130 | No hit | No description |
Pfam | PF00072 | 1.6E-7 | 55 | 108 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF46689 | 1.38E-5 | 126 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-11 | 127 | 154 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.5E-11 | 131 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MNLGSGKGST SSSPLKTGDV VSDKFPAGLR VMVVDDDPTC LRILERMLRA CLYEDMDGFK 60 LLEHIGLEMD LPVIMMSADD GKSVVMKGVT HGACDYLIKP VRIEALKNIW QHVIRKRKNG 120 LKDAEQSEAV PKKILELMNV PGLTRENVAS HLQKSHDWDL TSTGITYDSS QHANPLQGNI 180 DVSPSVLVHQ GFPCLQQQSV QTRDSNSIGK PLFCTGEAIH QSNLQNVSQH LNNLVDSSVR 240 VKAETFPDPS SQINNLFSDQ YGQEDLVTAF LKQQEGVGPS DHDLDFDGYS LDNIPV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g00640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499068.1 | 5e-97 | two-component response regulator ARR2 | ||||
TrEMBL | A0A1S3TZ77 | 1e-95 | A0A1S3TZ77_VIGRR; Two-component response regulator | ||||
STRING | XP_007138963.1 | 1e-80 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 5e-52 | response regulator 1 |