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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g10620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 268aa MW: 30179.5 Da PI: 4.9101 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.1 | 2.4e-21 | 85 | 145 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Vradi04g10620.1 85 RQRWTPTAMQLQILERIFDQgTGTPSKEKIKEITAELsqhgQISETNVYNWFQNRRARSKR 145 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104.3 | 7.9e-34 | 84 | 147 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq Vradi04g10620.1 84 SRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 147 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 79 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.965 | 81 | 146 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-18 | 83 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-14 | 83 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.30E-14 | 85 | 147 | No hit | No description |
Pfam | PF00046 | 3.7E-19 | 85 | 145 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MVNVMEWQKQ SWQPNGNAEM MYVKVMTDEQ LETLRKQIAV YATICEQLIE MHKTISSHQD 60 LAGIRLGNMY CDPLLGSSGH KIASRQRWTP TAMQLQILER IFDQGTGTPS KEKIKEITAE 120 LSQHGQISET NVYNWFQNRR ARSKRKQQNV APGVNAESEV ETEVDSKDKK TKADDFWSQL 180 NVSAGPSDNL GFQNHDDLPY LNENSDSNKP DSVFPSDGSL RSTRNFNHVP VFDGLLSNPG 240 NGYLTGKIEA PENYDLYQPS DDFDMAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g10620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496474.1 | 0.0 | WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 5e-78 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A1S3TRT0 | 0.0 | A0A1S3TRT0_VIGRR; WUSCHEL-related homeobox 13 | ||||
STRING | XP_007139251.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-80 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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