PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g10620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 268aa    MW: 30179.5 Da    PI: 4.9101
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g10620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.4e-2185145257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l    +++e++V++WFqNrRa+ k+
  Vradi04g10620.1  85 RQRWTPTAMQLQILERIFDQgTGTPSKEKIKEITAELsqhgQISETNVYNWFQNRRARSKR 145
                      89*****************99**************************************97 PP

2Wus_type_Homeobox104.37.9e-3484147265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq
    Vradi04g10620.1  84 SRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 147
                        689***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1779149IPR009057Homeodomain-like
PROSITE profilePS5007114.96581146IPR001356Homeobox domain
SuperFamilySSF466892.05E-1883148IPR009057Homeodomain-like
SMARTSM003892.4E-1483150IPR001356Homeobox domain
CDDcd000865.30E-1485147No hitNo description
PfamPF000463.7E-1985145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVNVMEWQKQ SWQPNGNAEM MYVKVMTDEQ LETLRKQIAV YATICEQLIE MHKTISSHQD  60
LAGIRLGNMY CDPLLGSSGH KIASRQRWTP TAMQLQILER IFDQGTGTPS KEKIKEITAE  120
LSQHGQISET NVYNWFQNRR ARSKRKQQNV APGVNAESEV ETEVDSKDKK TKADDFWSQL  180
NVSAGPSDNL GFQNHDDLPY LNENSDSNKP DSVFPSDGSL RSTRNFNHVP VFDGLLSNPG  240
NGYLTGKIEA PENYDLYQPS DDFDMAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g10620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496474.10.0WUSCHEL-related homeobox 13
SwissprotO817885e-78WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1S3TRT00.0A0A1S3TRT0_VIGRR; WUSCHEL-related homeobox 13
STRINGXP_007139251.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-80WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]