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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g10090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 327aa MW: 35996 Da PI: 4.992 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.5 | 7.5e-28 | 39 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++++ e+r+r g+ l +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + ++l+ Vradi04g10090.1 39 RWTRQEILVLIQGKSDAENRFRPGRgsgsafgLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLR 131 8*********************8755677788*********************************************9999999998888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.795 | 32 | 103 | IPR017877 | Myb-like domain |
CDD | cd12203 | 8.63E-15 | 38 | 110 | No hit | No description |
Pfam | PF13837 | 3.0E-13 | 39 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 39 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MALDQPSNPN AVDGAGNGAA PCSAADGGDD GRPPARLPRW TRQEILVLIQ GKSDAENRFR 60 PGRGSGSAFG LSEPKWALVS AYCKKHGVNR EPVQCRKRWS NLAGDYKKIK EWESQVRDET 120 ESFWLMRNDL RRERKLPGYF DREVYNILDS PSTAAAATVE TPTAAVEAAV DEEVHLYDSN 180 RRVGSDDGLF SDCEKEEVLL SAPSKDVPAP VPISEKQFQP LLQLCEGEGN AEGTTNEKRA 240 TPNPEMGSTS QGGRKRKRFS TDAEEESLQS QLIDVLEKNG KMLRDHLEAQ NTNFQLDRQQ 300 QKDTATNIVA VLDKLADALG RIADKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g10090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496636.1 | 0.0 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 3e-99 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1S3TS70 | 0.0 | A0A1S3TS70_VIGRR; trihelix transcription factor ASR3 | ||||
STRING | XP_007139321.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-97 | Trihelix family protein |
Publications ? help Back to Top | |||
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