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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g08530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 318aa MW: 35270.1 Da PI: 8.9204 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.3 | 1.4e-11 | 71 | 125 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkl 53 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k+ Vradi04g08530.1 71 SKFRGVSRHRWTGRYEAHLWDkLSWNItqKKKGKQ-GAYDEEESAARAYDLAALKK 125 79*******************88887784446666.9****************986 PP | |||||||
2 | AP2 | 29.9 | 1.4e-09 | 134 | 167 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 s+y+GV +++ +grW+A+I + g +k+ +lg++g Vradi04g08530.1 134 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYG 167 89****99**********99966...3.6********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-10 | 71 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-8 | 71 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-12 | 71 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-8 | 72 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.078 | 72 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-5 | 72 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-5 | 134 | 168 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-6 | 134 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-4 | 135 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.887 | 135 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0032 | 135 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEMMKHNIIE VSLGKSQISM AEGDLQATRC VKRRRREVAA AVSSGDDSHQ QQLPKQHGGE 60 NSTINTTKRS SKFRGVSRHR WTGRYEAHLW DKLSWNITQK KKGKQGAYDE EESAARAYDL 120 AALKKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYGGVS TPEAKLETQA 180 VLEGQKVASP SNYSLTEESK SSVIHNSFFS LDSLNSPVGQ ENFGNKPYPF SSSKSSSPTA 240 LGLLLRSSLF RELVEKNSNV SGDEADDGEV TKSEQPQIAS DDDLGGIFFD SIGDIPFVCD 300 PNRYNLELQE RDLHSIF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g08530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496860.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1S3TSY9 | 0.0 | A0A1S3TSY9_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | XP_007139600.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2198 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-50 | AP2 family protein |