![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi04g08400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 24703.6 Da PI: 7.7067 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.8 | 5.9e-06 | 76 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq +Lee F+++++++ rqV vWFqNrRa+ k Vradi04g08400.1 76 KKLRLTKEQSMVLEETFKEHNTLNP-------------PRQVEVWFQNRRARTK 116 6667778888888888888887775.............69************98 PP | |||||||
2 | HD-ZIP_I/II | 86.1 | 4.6e-28 | 75 | 152 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+ +LEe+F+e+++L+p prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +lk Vradi04g08400.1 75 RKKLRLTKEQSMVLEETFKEHNTLNP-------------PRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELR-ALK 152 69***********************9.............99**********************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.7E-8 | 7 | 42 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 5.99E-12 | 57 | 119 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-4 | 58 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.2E-5 | 73 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.46E-8 | 75 | 119 | No hit | No description |
PROSITE profile | PS50071 | 9.28 | 101 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 101 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00340 | 6.6E-26 | 118 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.3E-12 | 118 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
RSSDVIRVID VKSTVECEED NGISSPNSAV SSVSGSKRSE RDDDNAALVA SGERTSCSRG 60 SDDDDGGGGD CEGGRKKLRL TKEQSMVLEE TFKEHNTLNP PRQVEVWFQN RRARTKLKQT 120 EVDCEYLKRC CENLTEDNRR LQKEVQELRA LKSSPQMYMH MNPPTTLTMC PSCERGHSSS 180 TSSPAAAVHP AVVPPTPRKL FGANIRRPVA VNTWPFDGSI PRP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 110 | 118 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi04g08400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-151 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497427.1 | 1e-138 | homeobox-leucine zipper protein HAT3 isoform X1 | ||||
Swissprot | P46602 | 5e-71 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A1S3TUJ9 | 1e-137 | A0A1S3TUJ9_VIGRR; homeobox-leucine zipper protein HAT3 isoform X1 | ||||
STRING | XP_007139620.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60390.1 | 4e-58 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|