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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g08300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 410aa MW: 46836.3 Da PI: 8.4573 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 166 | 216 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg+f+t+e+Aa a+++a+ k++g Vradi04g08300.1 166 HYRGVRRRP-WGKFAAEIRDPKKNG--TRVWLGTFDTEEKAALAYDKAAFKMRG 216 8********.***********9998..*************************98 PP | |||||||
2 | AP2 | 61.2 | 2.4e-19 | 312 | 362 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+eeAa a+++a+ k++g Vradi04g08300.1 312 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAALAYDKAAFKMRG 362 7********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.689 | 56 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-6 | 56 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.35E-30 | 165 | 226 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 165 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-23 | 166 | 225 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.434 | 166 | 224 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-40 | 166 | 230 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-15 | 166 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 167 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 190 | 206 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 312 | 371 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-38 | 312 | 376 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-14 | 312 | 362 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.566 | 312 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 312 | 371 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.23E-23 | 320 | 372 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MDTYNSMNAT SEFDMTFSED YMVHDGLNDN NVLVWNEDWF SEKGDKAEEV VRRGTRYKGV 60 RRRAHGKFAA EIKDPNKKFT QSAKLAQNSN MTSATTDSDF EFLESVRQYL LGHDSVNLMP 120 ATHQVASHDP LSNPKRDDDL EDIVFRSEDA TAEVARHVHA PQAWKHYRGV RRRPWGKFAA 180 EIRDPKKNGT RVWLGTFDTE EKAALAYDKA AFKMRGQKAK LNFPHLIDSD NFETLSEPVM 240 ETTCKRKLSQ QSFEPSSPSS SCSEDSSESQ GTKRRKNLTH LLNKHDTCSN ASVDFSHPTE 300 AREVDAPPKW RRYRGVRRRP WGKFAAEIRD PKKNGARVWL GTYVTEEEAA LAYDKAAFKM 360 RGRKAKLNFP HLIDSDIRSQ AKVVEMALEA NVVQQWVNDF SDCTLIWCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 165 | 375 | 2 | 68 | ATERF1 |
3gcc_A | 2e-29 | 165 | 375 | 2 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g08300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497463.1 | 1e-134 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1S3TUL0 | 1e-133 | A0A1S3TUL0_VIGRR; ethylene-responsive transcription factor 1 | ||||
STRING | XP_007139636.1 | 1e-107 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 5e-35 | ethylene-responsive element binding factor 13 |