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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g04670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 264aa MW: 30229.6 Da PI: 9.7569 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.3e-19 | 27 | 112 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l s++l++g l lp kf++++g+ + t+ l+ ++ +Wevkl +k++g++++++GWkeF++ + L g +vF+++g+s f +v +++ Vradi04g04670.1 27 L--SNNLQHGKLKLPAKFVSKYGNH--LPSTMFLKLPNDAEWEVKL--EKSDGSVWFQQGWKEFAEYHSLAHGHLLVFTYNGTSHF--HVLICD 112 4..89999**************966..7889***************..*********************************99999..999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-24 | 17 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-25 | 17 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-18 | 21 | 112 | No hit | No description |
PROSITE profile | PS50863 | 13.592 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-18 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-16 | 26 | 112 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.02E-5 | 197 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-5 | 202 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.218 | 203 | 257 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MTSTLNQGDD SHGGTASKPI HFFRIILSNN LQHGKLKLPA KFVSKYGNHL PSTMFLKLPN 60 DAEWEVKLEK SDGSVWFQQG WKEFAEYHSL AHGHLLVFTY NGTSHFHVLI CDMSCMEIDY 120 PVNKANHKRV RIKSENIQPP KTMKTTENKK RCCSNLQDTA SDEKVRDHKG MLKNLNEGKR 180 NMEALENTSF MLIMKPTIFT NGTWRVKLVR YPNYSAYLTN LSDFARDNNL KEGDAWFFKL 240 MNMGDDVVMK VSFVARNSSL RGQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g04670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027927585.1 | 1e-158 | B3 domain-containing protein At4g01580-like | ||||
TrEMBL | A0A0L9U669 | 1e-168 | A0A0L9U669_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVR7 | 1e-168 | A0A0S3RVR7_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA08G44640.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 1e-24 | B3 family protein |