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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g03660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 421aa MW: 47611.5 Da PI: 8.0622 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.1e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Vradi04g03660.1 46 KPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.033 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-30 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-16 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-22 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-9 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-24 | 147 | 193 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MYHHPQHQGK NIHSSSRMPI PSERHMFLQT GNGSGDSGLV LSTDAKPRLK WTADLHARFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQSNN VTHKMTTSAA 120 TGERLSETSG THMNKLSLGP QANKDLHISE ALQMQIEVQR RLNEQLEVQR HLQLRIEAQG 180 KYLQSVLEKA QETLGRQNLG IVGLETAKVQ LSELVSKVSS QCLNSAFSEL KELQGFCPQQ 240 THTNQPNDCS VDSCLTSCDR SQKEQEIQNG FRHFNSHMFM EQKEATEAPN NLRNCELKWC 300 DDGKKNTFLA PLSRNEERRN YAAETGPGNL SMSIGLERET ENRSSMYPER LITENQTEVE 360 FQHRNRIKTE TMKPVDEKVS QDYRMPASYF VAPRLDLNNH GDNEAATTCK QLDLNRFSWS 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g03660.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497137.1 | 0.0 | myb-related protein 2 | ||||
Swissprot | Q9SQQ9 | 1e-143 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S3TTQ8 | 0.0 | A0A1S3TTQ8_VIGRR; myb-related protein 2 | ||||
STRING | XP_007150070.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-145 | G2-like family protein |
Publications ? help Back to Top | |||
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