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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g02870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 361aa MW: 40075.4 Da PI: 8.4868 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 275 | 308 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ + Vradi04g02870.1 275 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 308 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.7E-16 | 269 | 319 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.833 | 269 | 305 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.95E-14 | 270 | 331 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 273 | 306 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.31E-14 | 274 | 321 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 275 | 308 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 275 | 300 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MKDSWFFDNN FNGLSDDIFD DVVGFFDFPL EDVEDDWDSQ FKCLEHQHSE VFSASSNGLC 60 AKTQTENPQF GTEFSVSVSI LSAVMVGQGL IPKEPLCMCN GPSPIPSLLS VYGPEVRTSW 120 LCDYVRIKCN GISPIKQLAT APGPTYGKTI PLKNVTFNGK DLHRFRTYSP VSVFESSSSS 180 SVENSSFDRP VIPVKRARSK RHRRISFSPL FSIPFVQALQ KQQRTSASES DFGTNVAGNM 240 SNKVKSHKKK DLSLLSEDVE IMRSSHLVSD PPRKCMHCEV TKTPQWREGP MGPKTLCNAC 300 GVRYRSGRLF PEYRPAASPT FVASLHSNCH KKVVEMRSRV QEGVRGSVFA SSNLHENSVG 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g02870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498171.1 | 0.0 | GATA transcription factor 11 isoform X1 | ||||
Refseq | XP_014498172.1 | 0.0 | GATA transcription factor 11 isoform X2 | ||||
TrEMBL | A0A1S3TWL4 | 0.0 | A0A1S3TWL4_VIGRR; GATA transcription factor 11 isoform X1 | ||||
TrEMBL | A0A1S3TWN5 | 0.0 | A0A1S3TWN5_VIGRR; GATA transcription factor 11 isoform X2 | ||||
STRING | XP_007150193.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 4e-38 | GATA family protein |