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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g02560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 442aa MW: 48444.8 Da PI: 6.7437 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.4 | 3.7e-13 | 194 | 244 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Vradi04g02560.1 194 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 244 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.863 | 85 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-8 | 108 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-9 | 125 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-6 | 126 | 159 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 7.19E-17 | 194 | 253 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.86E-26 | 194 | 254 | No hit | No description |
Pfam | PF00847 | 1.1E-8 | 194 | 244 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-33 | 195 | 258 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 195 | 252 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-16 | 195 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 196 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 234 | 254 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MLDLNLNADS TQSQDSVMLL DKFPEASSGT SNSSVVNAEG SSNEDSCSTR AGDVFTFNFG 60 ILKVEGADDV VVSATKELFP ASAENWQGQS STSSFQDRKS LVDLSLDRQN GEVKVVQVQQ 120 QPQVKKSRRG GFDTAHAAAR AYDRAAIKFR GLDADINFNL VDYEEDLKQM KTLSKEEFVH 180 ILRRHSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI 240 KCNGREAVTN FEPSTYDSEM KPEAINEGGN HDLDLNLGIA TPGHGPKENI GHLQFQQVPY 300 STHPGRISRM ETNFSPVIGD PSLKRHVVTE ERPSVWNAAH YTFFPNLERA ERIGIDPSKG 360 VPNWAWQTHG QVTASPVPPF STAASSGFSI SATFPPNAIF PTKSVNSIPQ NLCFTSASAP 420 GSNTPQFYYE VKSTQAPSRP I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g02560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497966.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | B8AXC3 | 2e-87 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A1S3TW10 | 0.0 | A0A1S3TW10_VIGRR; ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
STRING | XP_007150248.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 3e-92 | related to AP2.7 |