![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi04g01180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 741aa MW: 84903.1 Da PI: 7.4209 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.3 | 3.4e-20 | 60 | 145 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF vr+++skk + n+ ++ ++vCs+egk ++ + e +t +++ +C a ++++k+ d+kw + +++l+HnHel+p Vradi04g01180.1 60 NFYKNYAIRCGFAVRTRTSKKDDYNN-VIYLRLVCSREGKYVSSINP---EVKTLPSQTNQCPAGITISKK-DDKWFIRTVNLNHNHELCP 145 6*****************99996666.999***********998877...999*****************9.9****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-17 | 60 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-36 | 265 | 359 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 741 aa Download sequence Send to blast |
MSEVPECNVN IDDFGMIDSS TSNINEVSDC NVNLDEHTAS GLEVDPTLHM CFDSMDDAKN 60 FYKNYAIRCG FAVRTRTSKK DDYNNVIYLR LVCSREGKYV SSINPEVKTL PSQTNQCPAG 120 ITISKKDDKW FIRTVNLNHN HELCPNTSKL IPGNRKLSMQ AKRTLEVNDE AEVRINKSYL 180 CVMTDAGGYD SMDFIERDAR NYISQHKRSL CKDGDGQALL RHFSAMKDLN KEFFYKIELD 240 EGNRICSVFW ADARSRAACE EFGDVVCFNT TYLTNKYDMP FMPFVGINHH GHSILLGCGL 300 LSSEDTRSFV WLFQSWLRCI SNKAPKGIIT DQCRAMANAI EEVFSNTRHR WCLWHIMKKL 360 LEKFSAYKEY NHIKSAINKL VYDCGCVADF ESGWEALLSR HGLHQNEWLC TMYDERQKWV 420 PCFLRNHFWA GMSITQRSEG MNAFFDGFIN SSTTLQQFVA QYDNALRVKA QKEIQADFSS 480 LNTTVGCGSQ SPIERQFQQE YTHSKFEEVQ MEFRGIICRH SLLVFGQEDV CSVPSKYVLR 540 RWSKNIRRRH TLIRAAYINS NLEPTMQRYQ SLCKTFYEIA EVACESEPVS NELEKELRLL 600 RQKFGCSLMM TNNIVSDGGE LRYDNAVPNF VPETVGEGVD LLVRNPVAVK RKGRPHTNRM 660 KSAVEKRTKK GKSASTQKTS RTSVEECGTR LPNVGQTQDH LQFETQGYQC YEVSQQSNMN 720 QSGFMSLLNA VHNNFDDNIV * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi04g01180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496683.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1S3TSD5 | 0.0 | A0A1S3TSD5_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_007134998.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-107 | FAR1 family protein |