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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 234aa MW: 28789.8 Da PI: 10.1505 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.1 | 1.7e-21 | 91 | 159 | 1 | 69 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +W+ qe+++ + +r e+++++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk ++++ Vradi04g00170.1 91 QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKMRQQMQM 159 7*************************************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.51E-23 | 90 | 153 | No hit | No description |
Pfam | PF13837 | 9.4E-15 | 91 | 159 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 92 | 148 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
FSFSLSSITK THSSIAFFYI IQSHSFILFY IGFLNLWLSS FGLRFQFFME GRHLHHHHHH 60 RQQQQQQQHQ HHHSHNITTG ANVDATDRFP QWSIQETKEF LVIRAELDQT FMETKRNKQL 120 WEVISNRMKE KGFHRSAEQC KCKWKNLVTR YKMRQQMQME AQWMEAFEAR ENERRMKEME 180 WRQTMEALEN ERMMMDQRWR EREEQRRIRE ELRADKRDAL ITALLNKLTR EQM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497307.1 | 5e-51 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1S3TU80 | 1e-49 | A0A1S3TU80_VIGRR; trihelix transcription factor GT-3b | ||||
STRING | XP_007140273.1 | 3e-48 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-33 | Trihelix family protein |