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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g09620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 655aa MW: 71247.5 Da PI: 6.1139 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.6 | 6.9e-29 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Vradi03g09620.1 211 KPRVVWSVELHRKFVAAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 264 79*******************.********************************8 PP | |||||||
2 | Response_reg | 85.9 | 1.2e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+pl +++l+++l+k +y +v+++ ++ eal++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + + Vradi03g09620.1 26 VLAVDDDPLCLKVLENLLRKCQY-QVTTTNQAVEALKMLRENRnkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMQGVTH 117 799********************.***************999889*******************87754.558********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel + Vradi03g09620.1 118 GACDYLLKPVRIEELKN 134 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.0E-162 | 1 | 652 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-43 | 23 | 157 | No hit | No description |
SuperFamily | SSF52172 | 7.54E-37 | 23 | 145 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.7E-35 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 45.262 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.6E-26 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.76E-30 | 27 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-30 | 208 | 268 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.584 | 208 | 267 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-19 | 209 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 211 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MAVENQRDHL GDEDGGGDRF PVGMRVLAVD DDPLCLKVLE NLLRKCQYQV TTTNQAVEAL 60 KMLRENRNKF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMQGVTHGAC 120 DYLLKPVRIE ELKNIWQHVV RRKNFDGRDQ SKASNDEKAL NIAGEGSLSL RSENSADQNK 180 RLGKKRKDQS EEEDDDGEGN GDDDDPSAQK KPRVVWSVEL HRKFVAAVNQ LGLEKAVPKK 240 ILDLMNVEGL TRENVASHLQ KYRLYLKKAN HQANMVAALG GSDSYLRMGS IDGFGDFCTA 300 SGSGRISNTT LPSYASSGIF SRLNSPAGLN MRGISSSTLI RPVQTQNINS SLNTLGNIQP 360 SIFSANQSSS LLQGIPTSIE LNQSKQSNCS TGLSQLSQVD SSAYTVASGF PDSRAATVNG 420 PNNSLSCGSN NHIILQGNPQ QTHGPGTFRN QSSVRSASLN AESFGIGGSS NMLDYNRCNK 480 NWQNAAQLSK FPANSSPLCE AFGNDQLPPT SINVSNSGTH IGNSPVDFSS RMAMSVPLED 540 VQPLSYAPQQ RWEEHKLDYD QNLSRPFNPV NPYASSSAAT SSMGHGLNQN NTICSNRINA 600 SLVGPCTDVD KFSSDIPLKS NEAYILEQLK SQEGFMQNTF GTLDDIMGAM VKRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-26 | 207 | 270 | 1 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 187 | KRLGKKRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g09620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496227.1 | 0.0 | two-component response regulator ARR12 | ||||
Swissprot | Q6K8X6 | 1e-135 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A1S3TR81 | 0.0 | A0A1S3TR81_VIGRR; Two-component response regulator | ||||
STRING | XP_007138266.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-130 | response regulator 12 |
Publications ? help Back to Top | |||
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