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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g05130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 264aa MW: 29434.7 Da PI: 6.8661 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.4 | 4.8e-36 | 15 | 68 | 7 | 60 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnys +qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++ Vradi03g05130.1 15 NCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRR 68 8**************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-25 | 1 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.192 | 14 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.2E-31 | 14 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 16 | 52 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MERGWKANSV EISPNCPRCG SSNTKFCYYN NYSSTQPRYF CKGCRRYWTK GGSLRNVPIG 60 GGCRKSRRGK YNKALRHVHG PVGHSDDLRP SSSVVSDGPN IDLAQVYASF LNVKPDQVQT 120 VCSPSPEYSS IVNTDFGHSA LSEEHHGLTG RLHFHEQPRE SHFGEDIEMY FCGLNSIQKH 180 QECSSSHDTT VTKTNFELPP LPGEVAETSH GNVLWSNSEM MVDHALQATQ WPLLGPEAYD 240 ADFLMGNCWS HFDLPRDASF SMP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g05130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495026.1 | 0.0 | dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1S3TMN1 | 0.0 | A0A1S3TMN1_VIGRR; dof zinc finger protein DOF3.5 | ||||
STRING | XP_007162976.1 | 1e-177 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-47 | Dof family protein |