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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g04880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 149aa MW: 16794.8 Da PI: 10.1306 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.8 | 2.9e-30 | 1 | 101 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ltpsdv+k++rlv+pk++ae+h g++++++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v F++++++ Vradi03g04880.1 1 LTPSDVGKLNRLVIPKQHAEKHfplessssssCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTH 94 68***********************99999994456799**************************************************87766 PP EE..EEE CS B3 89 efelvvk 95 +++++ Vradi03g04880.1 95 PQRFFIN 101 6656655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-29 | 1 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.451 | 1 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-27 | 1 | 93 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-36 | 1 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.7E-17 | 1 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-27 | 1 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
LTPSDVGKLN RLVIPKQHAE KHFPLESSSS SSCGDSAKGV LLSFEDESGK CWRFRYSYWN 60 SSQSYVLTKG WSRYVKDKRL HAGDVVFFHR HRTHPQRFFI NSSRRQANPP ANVTTTATPS 120 SYSAHPYPAH QLPFPYQPHS LHAAPGIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-44 | 1 | 107 | 18 | 119 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g04880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495594.1 | 1e-105 | B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8RYD3 | 8e-50 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | A0A1S3TPB7 | 1e-104 | A0A1S3TPB7_VIGRR; B3 domain-containing protein At2g36080-like | ||||
STRING | XP_007162942.1 | 4e-89 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.2 | 2e-50 | B3 family protein |
Publications ? help Back to Top | |||
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