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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g04320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 67773.8 Da PI: 6.7479 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.6 | 9.5e-30 | 136 | 221 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Vradi03g04320.1 136 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 221 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 51.8 | 2.1e-16 | 436 | 518 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++e+ L ++r eme+r+ + g++++ Wee++ km+ g+ers+ kekwe+ +++ ++ k+g+kkr +e+s+ c yfd+ Vradi03g04320.1 436 WPESEITRLQQLRAEMETRYMQsGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKR-KEDSRGCFYFDN 518 *******************98648**********************************************8.88899*****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.131 | 129 | 194 | IPR017877 | Myb-like domain |
CDD | cd12203 | 6.66E-20 | 136 | 201 | No hit | No description |
Pfam | PF13837 | 1.6E-20 | 136 | 222 | No hit | No description |
PROSITE profile | PS50090 | 5.459 | 428 | 493 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.3E-9 | 434 | 518 | No hit | No description |
CDD | cd12203 | 1.00E-14 | 436 | 500 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MEMEDHHHHH QHHHHQHHEQ QQQQYAITDL RQLMNGPRST HFPSMPPQPK AELFPGGHPN 60 LAASQHFEMM MFGRQVADIM PRCLHDFAST DSGTNNNNTS IAAATPTTTT SASTPPLSCL 120 EGETAGCIGG DASTGRWPRQ ETLTLLEIRS RLDSKFKEAN QKGPLWDEVS RIMSEEHGYQ 180 RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGENSNQT SVPETNFGSG 240 SLRFHSNSHN PSQTNQEMFH SQKHCDSLSL TNTTDLDTSS SDDNDQNSTG GLKDNDSTEK 300 RRKRLGGRSW KVKIKDFIDS QMRKLVEKQE EWLDKLTKTL EQKEKERVLR EEEWRRQEAV 360 RLEREHKFWA KERAWIEARD AALMEALQKL TGNEMIKSTQ SPEGVMVTGI QNHNENLNED 420 GSEILNSTTA RAAESWPESE ITRLQQLRAE METRYMQSGC SEEFMWEEIA TKMACFGYER 480 SALVFKEKWE STSNYARNAK DGNKKRKEDS RGCFYFDNSE QSSLYNQGGA YCDINDQRHE 540 RRLQNDGSSP SNSNVGNAVA GDHCFPFLMT ESANLWENYS LKVSKASQNQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g04320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494799.1 | 0.0 | trihelix transcription factor PTL | ||||
TrEMBL | A0A1S3TM03 | 0.0 | A0A1S3TM03_VIGRR; trihelix transcription factor PTL | ||||
STRING | XP_007162858.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-130 | Trihelix family protein |