PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g03350.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

S1Fa-like

Protein Properties

Length: 84aa MW: 9131.83 Da PI: 10.6282

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g03350.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	138.1	2e-43	19	83	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + +GlnPGlivllvvgglll+flvgn++ly+yaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe Vradi03g03350.1 19 ASNQGLNPGLIVLLVVGGLLLTFLVGNFVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 83 5569************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.1E-40	20	83	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MADDFEFADK VPPSFDRVAS NQGLNPGLIV LLVVGGLLLT FLVGNFVLYT YAQKTLPPRK 60 KKPVSKKKMK KERLKQGVSA PGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g03350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-102	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495220.1	2e-53	DNA-binding protein S1FA
Refseq	XP_017416263.1	2e-53	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	3e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A0L9U910	5e-52	A0A0L9U910_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RYM8	5e-52	A0A0S3RYM8_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3TN66	5e-52	A0A1S3TN66_VIGRR; DNA-binding protein S1FA
STRING	XP_007162731.1	4e-28	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]