PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g03260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 467aa    MW: 51332.8 Da    PI: 6.9492
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g03260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17126175155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Vradi03g03260.1 126 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 175
                      78*******************......55************************997 PP
2AP241.82.7e-13219274155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +   +  ++++++lg f+++ eAa+a+++a+ k +g
  Vradi03g03260.1 219 SKYRGVTLHK-CGRWEARMGQFLGKKvyCCRYIYLGLFDSELEAARAYDRAAIKCNG 274
                      89********.7******766544448666**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9126175IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-16126185IPR016177DNA-binding domain
CDDcd000188.38E-12127185No hitNo description
PROSITE profilePS5103217.794127183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17127184IPR001471AP2/ERF domain
SMARTSM003805.3E-33127189IPR001471AP2/ERF domain
CDDcd000184.70E-24219284No hitNo description
PfamPF008472.0E-9219274IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-14219284IPR016177DNA-binding domain
PROSITE profilePS5103215.172220282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-13220282IPR001471AP2/ERF domain
SMARTSM003802.7E-26220288IPR001471AP2/ERF domain
PRINTSPR003675.4E-6221232IPR001471AP2/ERF domain
PRINTSPR003675.4E-6264284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLDLNLNVDS PSDNNHTPPL SVAQMESSGS FNSSVVNAAD TDDSCSYGDA VAYNFAILNS  60
NTASPSAGES SVRTIQLFPA TDSAVSPTWL DFSSKVDQHG AASEQRITPR QPLVKKSRRG  120
PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI  180
NFNVSDYDED IKQVMSNFTK EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL  240
GKKVYCCRYI YLGLFDSELE AARAYDRAAI KCNGREAVTN FEPSIYEGEV ISQSDNEDGK  300
QNIDLNLGIA PPSYTDSQIK NTPSNGSGLK GPPSWDDIPV EKRFMFEHSG SRSLNVQASQ  360
GIYRVSGHHP STWNGGNFFP IYEETAIEKR MEAGPVPNWA WQVQGPYGGP TLTPPFSTAA  420
SSGFPSTIIP SAADTQIHFP NMTFLHSHFP PSITNSGTVS PFFIGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g03260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634911.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_022634912.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA91e-105AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A3Q0EUT00.0A0A3Q0EUT0_VIGRR; ethylene-responsive transcription factor RAP2-7 isoform X1
STRINGXP_007162717.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7